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Protein-nucleic acid interaction
This category describes methods for the analysis of protein-nucleic acid interactions including footprinting, interference, cross-linking, fluorescence techniques, one- and tri-hybrid strategies, in vivo methods and analysis of mutants.
Citations 1-10 of 133 total displayed.
- Methods Online
Assessment of the optimization of affinity and specificity at protein–DNA interfaces
- Justin Ashworth and David Baker
Nucleic Acids Res. 2009; 37: e73.
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- Methods Online
Robust methods for purification of histones from cultured mammalian cells with the preservation of their native modifications
- Pedro Rodriguez-Collazo, Sanford H. Leuba, and Jordanka Zlatanova
Nucleic Acids Res. 2009; 37: e81.
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- Methods Online
Tissue-specific regulatory network extractor (TS-REX): a database and software resource for the tissue and cell type-specific investigation of transcription factor-gene networks
- Federico Colecchia, Denise Kottwitz, Mandy Wagner, Cosima V. Pfenninger, Gerald Thiel, Ingo Tamm, Carsten Peterson, and Ulrike A. Nuber
Nucleic Acids Res. 2009; 37: e82.
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- Methods Online
Selection of aptamers for a protein target in cell lysate and their application to protein purification
- Sahar Javaherian, Michael U. Musheev, Mirzo Kanoatov, Maxim V. Berezovski, and Sergey N. Krylov
Nucleic Acids Res. 2009; 37: e62.
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- Methods Online
Accurate characterization of weak macromolecular interactions by titration of NMR residual dipolar couplings: application to the CD2AP SH3-C:ubiquitin complex
- Jose Luis Ortega-Roldan, Malene Ringkjøbing Jensen, Bernhard Brutscher, Ana I. Azuaga, Martin Blackledge, and Nico A. J. van Nuland
Nucleic Acids Res. 2009; 37: e70.
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- Methods Online
Composite RNA aptamers as functional mimics of proteins
- Daiying Xu and Hua Shi
Nucleic Acids Res. 2009; 37: e71.
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- Computational Biology
Engineering transcription factors with novel DNA-binding specificity using comparative genomics
- Tasha A. Desai, Dmitry A. Rodionov, Mikhail S. Gelfand, Eric J. Alm, and Christopher V. Rao
Nucleic Acids Res. 2009; 37: 2493-2503.
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- Methods Online
DNA sampling: a method for probing protein binding at specific loci on bacterial chromosomes
- Matej Butala, Stephen J. W. Busby, and David J. Lee
Nucleic Acids Res. 2009; 37: e37.
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- Methods Online
COTRASIF: conservation-aided transcription-factor-binding site finder
- Bogdan Tokovenko, Rostyslav Golda, Oleksiy Protas, Maria Obolenskaya, and Anna El'skaya
Nucleic Acids Res. 2009; 37: e49.
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- Nucleic Acid Enzymes
Targeting individual subunits of the FokI restriction endonuclease to specific DNA strands
- Kelly L. Sanders, Lucy E. Catto, Stuart R. W. Bellamy, and Stephen E. Halford
Nucleic Acids Res. 2009; 37: 2105-2115.
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