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Protein-nucleic acid interaction
This category describes methods for the analysis of protein-nucleic acid interactions including footprinting, interference, cross-linking, fluorescence techniques, one- and tri-hybrid strategies, in vivo methods and analysis of mutants.
Citations 1-10 of 140 total displayed.
- Methods Online
A generalized conformational energy function of DNA derived from molecular dynamics simulations
- Satoshi Yamasaki, Tohru Terada, Kentaro Shimizu, Hidetoshi Kono, and Akinori Sarai
Nucleic Acids Res. 2009; 37: e135.
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- Nucleic Acid Enzymes
High-resolution profiling of homing endonuclease binding and catalytic specificity using yeast surface display
- Jordan Jarjour, Hoku West-Foyle, Michael T. Certo, Christopher G. Hubert, Lindsey Doyle, Melissa M. Getz, Barry L. Stoddard, and Andrew M. Scharenberg
Nucleic Acids Res. 2009; 37: 6871-6880.
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- Methods Online
cDNA display: a novel screening method for functional disulfide-rich peptides by solid-phase synthesis and stabilization of mRNA–protein fusions
- Junichi Yamaguchi, Mohammed Naimuddin, Manish Biyani, Toru Sasaki, Masayuki Machida, Tai Kubo, Takashi Funatsu, Yuzuru Husimi, and Naoto Nemoto
Nucleic Acids Res. 2009; 37: e108.
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- Gene Regulation, Chromatin and Epigenetics
Analysis of individual remodeled nucleosomes reveals decreased histone–DNA contacts created by hSWI/SNF
- Karim Bouazoune, Tina B. Miranda, Peter A. Jones, and Robert E. Kingston
Nucleic Acids Res. 2009; 37: 5279-5294.
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- Nucleic Acid Enzymes
Dissecting protein-induced DNA looping dynamics in real time
- Niels Laurens, Stuart R. W. Bellamy, August F. Harms, Yana S. Kovacheva, Stephen E. Halford, and Gijs J. L. Wuite
Nucleic Acids Res. 2009; 37: 5454-5464.
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- Computational Biology
Local combinational variables: an approach used in DNA-binding helix-turn-helix motif prediction with sequence information
- Wenwei Xiong, Tonghua Li, Kai Chen, and Kailin Tang
Nucleic Acids Res. 2009; 37: 5632-5640.
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- Methods Online
Tracking transcription factor complexes on DNA using total internal reflectance fluorescence protein binding microarrays
- Andrew J. Bonham, Thorsten Neumann, Matthew Tirrell, and Norbert O. Reich
Nucleic Acids Res. 2009; 37: e94.
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- Methods Online
Assessment of the optimization of affinity and specificity at protein–DNA interfaces
- Justin Ashworth and David Baker
Nucleic Acids Res. 2009; 37: e73.
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- Methods Online
Robust methods for purification of histones from cultured mammalian cells with the preservation of their native modifications
- Pedro Rodriguez-Collazo, Sanford H. Leuba, and Jordanka Zlatanova
Nucleic Acids Res. 2009; 37: e81.
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- Methods Online
Tissue-specific regulatory network extractor (TS-REX): a database and software resource for the tissue and cell type-specific investigation of transcription factor-gene networks
- Federico Colecchia, Denise Kottwitz, Mandy Wagner, Cosima V. Pfenninger, Gerald Thiel, Ingo Tamm, Carsten Peterson, and Ulrike A. Nuber
Nucleic Acids Res. 2009; 37: e82.
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