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Protein-nucleic acid interaction


This category describes methods for the analysis of protein-nucleic acid interactions including footprinting, interference, cross-linking, fluorescence techniques, one- and tri-hybrid strategies, in vivo methods and analysis of mutants.


Citations 91-100 of 140 total displayed.

Past content

NAR Methods Online
Quantitative high-throughput analysis of transcription factor binding specificities
Jane Linnell, Richard Mott, Simon Field, Dominic P. Kwiatkowski, Jiannis Ragoussis, and Irina A. Udalova
Nucleic Acids Res. 2004; 32: e44. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

Articles
A novel strategy to engineer DNA polymerases for enhanced processivity and improved performance in vitro
Yan Wang, Dennis E. Prosen, Li Mei, John C. Sullivan, Michael Finney, and Peter B. Vander Horn
Nucleic Acids Res. 2004; 32: 1197-1207. [Abstract] [Full text] [Print PDF]  

NAR Methods Online
A novel assay to determine the sequence preference and affinity of DNA minor groove binding compounds
Rita Thomas, Carolyn Gonzalez, Christopher Roberts, Janos Botyanszki, Lillian Lou, and Emil F. Michelotti
Nucleic Acids Res. 2004; 32: e8. [Abstract] [Full text] [Print PDF]  

Articles
Transient XylR binding to the UAS of the Pseudomonas putida {sigma}54 promoter Pu revealed with high intensity UV footprinting in vivo
Marc Valls and Víctor de Lorenzo
Nucleic Acids Res. 2003; 31: 6926-6934. [Abstract] [Full text] [Print PDF]  

NAR Methods Online
Short bioactive Spiegelmers to migraine-associated calcitonin gene-related peptide rapidly identified by a novel approach: Tailored-SELEX
Axel Vater, Florian Jarosch, Klaus Buchner, and Sven Klussmann
Nucleic Acids Res. 2003; 31: e130. [Abstract] [Full text] [Print PDF]  

NAR Methods Online
Pentaprobe: a comprehensive sequence for the one-step detection of DNA-binding activities
Ann H. Y. Kwan, Robert Czolij, Joel P. Mackay, and Merlin Crossley
Nucleic Acids Res. 2003; 31: e124. [Abstract] [Full text] [Print PDF]  

NAR Methods Online
DNA display for in vitro selection of diverse peptide libraries
Masato Yonezawa, Nobuhide Doi, Yuko Kawahashi, Toru Higashinakagawa, and Hiroshi Yanagawa
Nucleic Acids Res. 2003; 31: e118. [Abstract] [Full text] [Print PDF]  

Articles
Using pyrene-labeled HIV-1 TAR to measure RNA–small molecule binding
Kenneth F. Blount and Yitzhak Tor
Nucleic Acids Res. 2003; 31: 5490-5500. [Abstract] [Full text] [Print PDF]  

NAR Methods Online
An improved method for the in vitro evolution of aptamers and applications in protein detection and purification
Michael B. Murphy, Shirin T. Fuller, Paul M. Richardson, and Sharon A. Doyle
Nucleic Acids Res. 2003; 31: e110. [Abstract] [Full text] [Print PDF]  

NAR Methods Online
Heteromeric MAPPIT: a novel strategy to study modification-dependent protein–protein interactions in mammalian cells
Irma Lemmens, Sven Eyckerman, Lennart Zabeau, Dominiek Catteeuw, Els Vertenten, Kristin Verschueren, Danny Huylebroeck, Joël Vandekerckhove, and Jan Tavernier
Nucleic Acids Res. 2003; 31: e75. [Abstract] [Full text] [Print PDF]  

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