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Protein-nucleic acid interaction
This category describes methods for the analysis of protein-nucleic acid interactions including footprinting, interference, cross-linking, fluorescence techniques, one- and tri-hybrid strategies, in vivo methods and analysis of mutants.
Citations 11-20 of 140 total displayed.
- Methods Online
Selection of aptamers for a protein target in cell lysate and their application to protein purification
- Sahar Javaherian, Michael U. Musheev, Mirzo Kanoatov, Maxim V. Berezovski, and Sergey N. Krylov
Nucleic Acids Res. 2009; 37: e62.
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- Methods Online
Accurate characterization of weak macromolecular interactions by titration of NMR residual dipolar couplings: application to the CD2AP SH3-C:ubiquitin complex
- Jose Luis Ortega-Roldan, Malene Ringkjøbing Jensen, Bernhard Brutscher, Ana I. Azuaga, Martin Blackledge, and Nico A. J. van Nuland
Nucleic Acids Res. 2009; 37: e70.
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- Methods Online
Composite RNA aptamers as functional mimics of proteins
- Daiying Xu and Hua Shi
Nucleic Acids Res. 2009; 37: e71.
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- Computational Biology
Engineering transcription factors with novel DNA-binding specificity using comparative genomics
- Tasha A. Desai, Dmitry A. Rodionov, Mikhail S. Gelfand, Eric J. Alm, and Christopher V. Rao
Nucleic Acids Res. 2009; 37: 2493-2503.
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- Methods Online
DNA sampling: a method for probing protein binding at specific loci on bacterial chromosomes
- Matej Butala, Stephen J. W. Busby, and David J. Lee
Nucleic Acids Res. 2009; 37: e37.
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- Methods Online
COTRASIF: conservation-aided transcription-factor-binding site finder
- Bogdan Tokovenko, Rostyslav Golda, Oleksiy Protas, Maria Obolenskaya, and Anna El'skaya
Nucleic Acids Res. 2009; 37: e49.
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- Nucleic Acid Enzymes
Targeting individual subunits of the FokI restriction endonuclease to specific DNA strands
- Kelly L. Sanders, Lucy E. Catto, Stuart R. W. Bellamy, and Stephen E. Halford
Nucleic Acids Res. 2009; 37: 2105-2115.
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- Methods Online
Mutually exclusive STAT1 modifications identified by Ubc9/substrate dimerization-dependent SUMOylation
- Susan Zimnik, Matthias Gaestel, and Rainer Niedenthal
Nucleic Acids Res. 2009; 37: e30.
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- Methods Online
Sensing peptide–oligonucleotide interactions by a two-color fluorescence label: application to the HIV-1 nucleocapsid protein
- Volodymyr V. Shvadchak, Andrey S. Klymchenko, Hugues de Rocquigny, and Yves Mély
Nucleic Acids Res. 2009; 37: e25.
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- Methods Online
Array-based evolution of DNA aptamers allows modelling of an explicit sequence-fitness landscape
- Christopher G. Knight, Mark Platt, William Rowe, David C. Wedge, Farid Khan, Philip J. R. Day, Andy McShea, Joshua Knowles, and Douglas B. Kell
Nucleic Acids Res. 2009; 37: e6.
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