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Protein-nucleic acid interaction
This category describes methods for the analysis of protein-nucleic acid interactions including footprinting, interference, cross-linking, fluorescence techniques, one- and tri-hybrid strategies, in vivo methods and analysis of mutants.
Citations 21-30 of 140 total displayed.
- Methods Online
Optimization of experimental design parameters for high-throughput chromatin immunoprecipitation studies
- Romina Ponzielli, Paul C. Boutros, Sigal Katz, Angelina Stojanova, Adam P. Hanley, Fereshteh Khosravi, Christina Bros, Igor Jurisica, and Linda Z. Penn
Nucleic Acids Res. 2008; 36: e144.
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- Methods Online
Extensive chromatin fragmentation improves enrichment of protein binding sites in chromatin immunoprecipitation experiments
- Xiaochun Fan, Nathan Lamarre-Vincent, Qian Wang, and Kevin Struhl
Nucleic Acids Res. 2008; 36: e125.
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- Methods Online
Cell-free selection of RNA-binding proteins using in vitro compartmentalization
- Yu Chen, Jana Mandic, and Gabriele Varani
Nucleic Acids Res. 2008; 36: e128.
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- Methods Online
Analysis of factor interactions with RNA polymerase II elongation complexes using a new electrophoretic mobility shift assay
- Bo Cheng and David H. Price
Nucleic Acids Res. 2008; 36: e135.
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- Methods Online
A functional selection of viral genetic elements in cultured cells to identify hepatitis C virus RNA translation inhibitors
- Loic Jaffrelo, Sandrine Chabas, Sandrine Reigadas, Aude Pflieger, Czeslaw Wychowski, Julie Rumi, Michel Ventura, Jean-Jacques Toulmé, and Cathy Staedel
Nucleic Acids Res. 2008; 36: e95.
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- Gene Regulation, Chromatin and Epigenetics
A high-throughput percentage-of-binding strategy to measure binding energies in DNA–protein interactions: application to genome-scale site discovery
- Xiaohu Wang, Haichun Gao, Yufeng Shen, George M. Weinstock, Jizhong Zhou, and Timothy Palzkill
Nucleic Acids Res. 2008; 36: 4863-4871.
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- Structural Biology
The proofreading exonuclease subunit  of Escherichia coli DNA polymerase III is tethered to the polymerase subunit  via a flexible linker
- Kiyoshi Ozawa, Slobodan Jergic, Ah Young Park, Nicholas E. Dixon, and Gottfried Otting
Nucleic Acids Res. 2008; 36: 5074-5082.
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- Methods Online
Quick identification of Type I restriction enzyme isoschizomers using newly developed pTypeI and reference plasmids
- Junichi Ryu and Edward Rowsell
Nucleic Acids Res. 2008; 36: e81.
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- Methods Online
A protein–DNA docking benchmark
- Marc van Dijk and Alexandre M. J. J. Bonvin
Nucleic Acids Res. 2008; 36: e88.
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- Structural Biology
Structural analysis of the genetic switch that regulates the expression of restriction-modification genes
- John E. McGeehan, Simon D. Streeter, Sarah -J. Thresh, Neil Ball, Raimond B. G. Ravelli, and G. Geoff Kneale
Nucleic Acids Res. 2008; 36: 4778-4787.
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