Skip Navigation

Protein-nucleic acid interaction


This category describes methods for the analysis of protein-nucleic acid interactions including footprinting, interference, cross-linking, fluorescence techniques, one- and tri-hybrid strategies, in vivo methods and analysis of mutants.

Citations 41-50 of 140 total displayed.

Past content

Molecular Biology
Identification of eukaryotic promoter regulatory elements using nonhomologous random recombination
Jeffrey B. Doyon and David R. Liu
Nucleic Acids Res. 2007; 35: 5851-5860. [Abstract] [Full text] [Print PDF]  

Methods Online
Analytical biochemistry of DNA–protein assemblies from crude cell extracts
Nadia Hégarat, Gildas Mouta Cardoso, Filippo Rusconi, Jean-Christophe François, and Danièle Praseuth
Nucleic Acids Res. 2007; 35: e92. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

Methods Online
General transfer matrix formalism to calculate DNA–protein–drug binding in gene regulation: application to OR operator of phage {lambda}
Vladimir B. Teif
Nucleic Acids Res. 2007; 35: e80. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

Methods Online
Profiling the DNA-binding specificities of engineered Cys2His2 zinc finger domains using a rapid cell-based method
Xiangdong Meng, Stacey Thibodeau-Beganny, Tao Jiang, J. Keith Joung, and Scot A. Wolfe
Nucleic Acids Res. 2007; 35: e81. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

Methods Online
Sequence specificity of single-stranded DNA-binding proteins: a novel DNA microarray approach
Hugh P. Morgan, Peter Estibeiro, Martin A. Wear, Klaas E.A. Max, Udo Heinemann, Liza Cubeddu, Maurice P. Gallagher, Peter J. Sadler, and Malcolm D. Walkinshaw
Nucleic Acids Res. 2007; 35: e75. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

Methods Online
High-resolution AFM imaging of single-stranded DNA-binding (SSB) protein—DNA complexes
Loïc Hamon, David Pastré, Pauline Dupaigne, Cyrille Le Breton, Eric Le Cam, and Olivier Piétrement
Nucleic Acids Res. 2007; 35: e58. [Abstract] [Full text] [Print PDF]  

Nucleic Acid Enzymes
Flow cytometric analysis of DNA binding and cleavage by cell surface-displayed homing endonucleases
Petra Volná, Jordan Jarjour, Sarah Baxter, Steve R. Roffler, Raymond J. Monnat, Jr, Barry L. Stoddard, and Andrew M. Scharenberg
Nucleic Acids Res. 2007; 35: 2748-2758. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

Methods Online
Rapid coupling of Surface Plasmon Resonance (SPR and SPRi) and ProteinChipTM based mass spectrometry for the identification of proteins in nucleoprotein interactions
Emeline Bouffartigues, Hervé Leh, Marielle Anger-Leroy, Sylvie Rimsky, and Malcolm Buckle
Nucleic Acids Res. 2007; 35: e39. [Abstract] [Full text] [Print PDF]  

Computational Biology
DISPLAR: an accurate method for predicting DNA-binding sites on protein surfaces
Harianto Tjong and Huan-Xiang Zhou
Nucleic Acids Res. 2007; 35: 1465-1477. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

Computational Biology
Energetics of protein–DNA interactions
Jason E. Donald, William W. Chen, and Eugene I. Shakhnovich
Nucleic Acids Res. 2007; 35: 1039-1047. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

[First page]   [Previous page]   [Next page]
Pages: 1 2 3 4 5 6 7 8 9 10 11 12 13 14

* Subspecialty Collections Home