Protein-nucleic acid interaction

Citations 51-60 of 140 total displayed.

Past content

Computational Biology
Structure-based prediction of C₂H₂ zinc-finger binding specificity: sensitivity to docking geometry

Trevor W. Siggers and Barry Honig
Nucleic Acids Res. 2007; 35: 1085-1097. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

Structural Biology
Small-angle X-ray characterization of the nucleoprotein complexes resulting from DNA-induced oligomerization of HIV-1 integrase

Svetlana Baranova, Fedor V. Tuzikov, Olga D. Zakharova, Natalia A. Tuzikova, Christina Calmels, Simon Litvak, Laura Tarrago-Litvak, Vincent Parissi, and Georgy A. Nevinsky
Nucleic Acids Res. 2007; 35: 975-987. [Abstract] [Full text] [Print PDF]  

Methods Online
CoMoDis: composite motif discovery in mammalian genomes

Ian J. Donaldson and Berthold Göttgens
Nucleic Acids Res. 2007; 35: e1. [Abstract] [Full text] [Print PDF]  

Methods Online
A microfluidic-FCS platform for investigation on the dissociation of Sp1-DNA complex by doxorubicin

Hsin-Chih Yeh, Christopher M. Puleo, Teck Chuan Lim, Yi-Ping Ho, Paul E. Giza, Ru Chih C. Huang, and Tza-Huei Wang
Nucleic Acids Res. 2006; 34: e144. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

Methods Online
A comparative analysis of genome-wide chromatin immunoprecipitation data for mammalian transcription factors

Hongkai Ji, Steven A. Vokes, and Wing H. Wong
Nucleic Acids Res. 2006; 34: e146. [Abstract] [Full text] [Print PDF] [ Supplementary Data ]  

Methods Online
In vitro evolution of single-chain antibodies using mRNA display

Isao Fukuda, Kanehisa Kojoh, Noriko Tabata, Nobuhide Doi, Hideaki Takashima, Etsuko Miyamoto-Sato, and Hiroshi Yanagawa
Nucleic Acids Res. 2006; 34: e127. [Abstract] [Full text] [Print PDF]  

Methods Online
Solid-phase translation and RNA–protein fusion: a novel approach for folding quality control and direct immobilization of proteins using anchored mRNA

Manish Biyani, Yuzuru Husimi, and Naoto Nemoto
Nucleic Acids Res. 2006; 34: e140. [Abstract] [Full text] [Print PDF]  

Computational Biology
A graph-based motif detection algorithm models complex nucleotide dependencies in transcription factor binding sites

Brian T. Naughton, Eugene Fratkin, Serafim Batzoglou, and Douglas L. Brutlag
Nucleic Acids Res. 2006; 34: 5730-5739. [Abstract] [Full text] [Print PDF]  

Computational Biology
Computational analysis of tissue-specific combinatorial gene regulation: predicting interaction between transcription factors in human tissues

Xueping Yu, Jimmy Lin, Donald J. Zack, and Jiang Qian
Nucleic Acids Res. 2006; 34: 4925-4936. [Abstract] [Full text] [Print PDF] [ Supplementary Data ]  

RNA
Dynamics of nascent mRNA folding and RNA–protein interactions: an alternative TAR RNA structure is involved in the control of HIV-1 mRNA transcription

Sara N. Richter, François Bélanger, Ping Zheng, and Tariq M. Rana
Nucleic Acids Res. 2006; 34: 4278-4292. [Abstract] [Full text] [Print PDF]  

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