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Protein-nucleic acid interaction


This category describes methods for the analysis of protein-nucleic acid interactions including footprinting, interference, cross-linking, fluorescence techniques, one- and tri-hybrid strategies, in vivo methods and analysis of mutants.


Citations 61-70 of 140 total displayed.

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Methods Online
Engineering a high-affinity methyl-CpG-binding protein
Helle F. Jørgensen, Karen Adie, Pascal Chaubert, and Adrian P. Bird
Nucleic Acids Res. 2006; 34: e96. [Abstract] [Full text] [Print PDF]  

Articles
Protein binding site prediction using an empirical scoring function
Shide Liang, Chi Zhang, Song Liu, and Yaoqi Zhou
Nucleic Acids Res. 2006; 34: 3698-3707. [Abstract] [Full text] [Print PDF]  

Articles
H1 RNA polymerase III promoter-driven expression of an RNA aptamer leads to high-level inhibition of intracellular protein activity
Jing Mi, Xiuwu Zhang, Zahid N Rabbani, Yingmiao Liu, Zhen Su, Zeljko Vujaskovic, Christopher D. Kontos, Bruce A. Sullenger, and Bryan M. Clary
Nucleic Acids Res. 2006; 34: 3577-3584. [Abstract] [Full text] [Print PDF]  

Articles
Strong physical constraints on sequence-specific target location by proteins on DNA molecules
Henrik Flyvbjerg, Steven A. Keatch, and David T.F. Dryden
Nucleic Acids Res. 2006; 34: 2550-2557. [Abstract] [Full text] [Print PDF] [ Supplementary Data ]  

Methods Online
Hydroxyl radical footprinting in vivo: mapping macromolecular structures with synchrotron radiation
Tadepalli Adilakshmi, Richard A. Lease, and Sarah A. Woodson
Nucleic Acids Res. 2006; 34: e64. [Abstract] [Full text] [Print PDF]  

Methods Online
Fast Fenton footprinting: a laboratory-based method for the time-resolved analysis of DNA, RNA and proteins
Inna Shcherbakova, Somdeb Mitra, Robert H. Beer, and Michael Brenowitz
Nucleic Acids Res. 2006; 34: e48. [Abstract] [Full text] [Print PDF]  

Methods Online
A reliable method to display authentic DNase I hypersensitive sites at long-ranges in single-copy genes from large genomes
Matthew E. Pipkin and Mathias G. Lichtenheld
Nucleic Acids Res. 2006; 34: e34. [Abstract] [Full text] [Print PDF]  

Methods Online
Affinity selection of DNA-binding protein complexes using mRNA display
Seiji Tateyama, Kenichi Horisawa, Hideaki Takashima, Etsuko Miyamoto-Sato, Nobuhide Doi, and Hiroshi Yanagawa
Nucleic Acids Res. 2006; 34: e27. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

Methods Online
Fast chromatin immunoprecipitation assay
Joel D. Nelson, Oleg Denisenko, Pavel Sova, and Karol Bomsztyk
Nucleic Acids Res. 2006; 34: e2. [Abstract] [Full text] [Print PDF]  

Articles
Simulation of non-specific protein–mRNA interactions
James Magee and Jim Warwicker
Nucleic Acids Res. 2005; 33: 6694-6699. [Abstract] [Full text] [Print PDF]  

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