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Protein-nucleic acid interaction


This category describes methods for the analysis of protein-nucleic acid interactions including footprinting, interference, cross-linking, fluorescence techniques, one- and tri-hybrid strategies, in vivo methods and analysis of mutants.


Citations 81-90 of 140 total displayed.

Past content

Methods Online
In vitro selection of Jun-associated proteins using mRNA display
Kenichi Horisawa, Seiji Tateyama, Masamichi Ishizaka, Nobutaka Matsumura, Hideaki Takashima, Etsuko Miyamoto-Sato, Nobuhide Doi, and Hiroshi Yanagawa
Nucleic Acids Res. 2004; 32: e169. [Abstract] [Full text] [Print PDF] [ Supplementary Material ] [ Supplementary Material ] [ Supplementary Material ]  

Methods Online
In situ imaging and isolation of proteins using dsDNA oligonucleotides
Graham Dellaire, Rozalia Nisman, Christopher H. Eskiw, and David P. Bazett-Jones
Nucleic Acids Res. 2004; 32: e165. [Abstract] [Full text] [Print PDF]  

Methods Online
Quantitative sequential chromatin immunoprecipitation, a method for analyzing co-occupancy of proteins at genomic regions in vivo
Joseph V. Geisberg and Kevin Struhl
Nucleic Acids Res. 2004; 32: e151. [Abstract] [Full text] [Print PDF]  

Articles
Identification of the CRP regulon using in vitro and in vivo transcriptional profiling
Dongling Zheng, Chrystala Constantinidou, Jon L. Hobman, and Stephen D. Minchin
Nucleic Acids Res. 2004; 32: 5874-5893. [Abstract] [Full text] [Print PDF]  

Methods Online
A novel strategy for the identification of protein–DNA contacts by photocrosslinking and mass spectrometry
Hildegard Geyer, Rudolf Geyer, and Vera Pingoud
Nucleic Acids Res. 2004; 32: e132. [Abstract] [Full text] [Print PDF]  

Methods Online
Detection of protein–DNA interaction with a DNA probe: distinction between single-strand and double-strand DNA–protein interaction
Changill Ban, Suhman Chung, Deog-Su Park, and Yoon-Bo Shim
Nucleic Acids Res. 2004; 32: e110. [Abstract] [Full text] [Print PDF]  

Methods Online
Protein–DNA footprinting by endcapped duplex oligodeoxyribonucleotides
Pei-Sze Ng and Donald E. Bergstrom
Nucleic Acids Res. 2004; 32: e107. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

Methods Online
ChIP Display: novel method for identification of genomic targets of transcription factors
Artem Barski and Baruch Frenkel
Nucleic Acids Res. 2004; 32: e104. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

Methods Online
Measuring specific interaction of transcription factor ZmDREB1A with its DNA responsive element at the molecular level
Yaxin Jiang, Feng Qin, Yiqin Li, Xiaohong Fang, and Chunli Bai
Nucleic Acids Res. 2004; 32: e101. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

Articles
A phage display selection of engrailed homeodomain mutants and the importance of residue Q50
Matthew D. Simon, Ken Sato, Gregory A. Weiss, and Kevan M. Shokat
Nucleic Acids Res. 2004; 32: 3623-3631. [Abstract] [Full text] [Print PDF]  

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