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Cell biology


This category presents methods using nucleic acids to answer questions in the field of cellular biology. These can be vector-based assays to analyze cellular processes such as intra- and inter-cellular transport, apoptosis, etc. Methods for structural and biochemical studies of nucleic acid-containing organelles and macromolecular, nucleoprotein particles are also presented.

Citations 11-20 of 32 total displayed.

Past content

Methods Online
Visualizing the proteome of Escherichia coli: an efficient and versatile method for labeling chromosomal coding DNA sequences (CDSs) with fluorescent protein genes
Rory M. Watt, Jing Wang, Meikid Leong, Hsiang-fu Kung, Kathryn S.E. Cheah, Depei Liu, Antoine Danchin, and Jian-Dong Huang
Nucleic Acids Res. 2007; 35: e37. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

Computational Biology
PLPD: reliable protein localization prediction from imbalanced and overlapped datasets
KiYoung Lee, Dae-Won Kim, DoKyun Na, Kwang H. Lee, and Doheon Lee
Nucleic Acids Res. 2006; 34: 4655-4666. [Abstract] [Full text] [Print PDF] [ Supplementary Data ]  

Computational Biology
Computational analysis of tissue-specific combinatorial gene regulation: predicting interaction between transcription factors in human tissues
Xueping Yu, Jimmy Lin, Donald J. Zack, and Jiang Qian
Nucleic Acids Res. 2006; 34: 4925-4936. [Abstract] [Full text] [Print PDF] [ Supplementary Data ]  

Methods Online
PLPD: reliable protein localization prediction from imbalanced and overlapped datasets
KiYoung Lee, Dae-Won Kim, DoKyun Na, Kwang H. Lee, and Doheon Lee
Nucleic Acids Res. Advance Access published on September 11, 2006; doi: 10.1093/nar/gkl638. [Abstract] [Full text] [Print PDF] [ Supplementary Data ]  

Methods Online
High-throughput trapping of secretory pathway genes in mouse embryonic stem cells
Silke De-Zolt, Frank Schnütgen, Claudia Seisenberger, Jens Hansen, Melanie Hollatz, Thomas Floss, Patricia Ruiz, Wolfgang Wurst, and Harald von Melchner
Nucleic Acids Res. 2006; 34: e25. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

Articles
Rearranging the centromere of the human Y chromosome with {varphi}C31 integrase
Sunir Malla, Felix Dafhnis-Calas, John F. Y. Brookfield, Margaret C. M. Smith, and William R. A. Brown
Nucleic Acids Res. 2005; 33: 6101-6113. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

Methods Online
An ES cell system for rapid, spatial and temporal analysis of gene function in vitro and in vivo
Junhao Mao, Jeffery Barrow, Jill McMahon, Joe Vaughan, and Andrew P. McMahon
Nucleic Acids Res. 2005; 33: e155. [Abstract] [Full text] [Print PDF]  

Articles
PCNA acts as a stationary loading platform for transiently interacting Okazaki fragment maturation proteins
Anje Sporbert, Petra Domaing, Heinrich Leonhardt, and M. Cristina Cardoso
Nucleic Acids Res. 2005; 33: 3521-3528. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

Articles
tRNA-linked molecular beacons for imaging mRNAs in the cytoplasm of living cells
Musa M. Mhlanga, Diana Y. Vargas, Cindy W. Fung, Fred Russell Kramer, and Sanjay Tyagi
Nucleic Acids Res. 2005; 33: 1902-1912. [Abstract] [Full text] [Print PDF]  

Methods Online
An efficient system to establish multiple embryonic stem cell lines carrying an inducible expression unit
Shinji Masui, Daisuke Shimosato, Yayoi Toyooka, Rika Yagi, Kazue Takahashi, and Hitoshi Niwa
Nucleic Acids Res. 2005; 33: e43. [Abstract] [Full text] [Print PDF]  

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