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Chromatin
This category presents techniques for analyzing chromatin organization in vivo, as well as, in vitro assays for the analysis and characterization of chromatin and its constituents including, but not limited to, in situ studies of nuclease sensitivity and protection, CHIP (chromatin immunoprecipitation), footprinting, nucleosome structure, characterization and preparation of chromatin (e.g. histone modifications) and chromatin-associated components (see also PROTEIN-NUCLEIC ACID INTERACTIONS).
Citations 1-10 of 25 total displayed.
- Gene Regulation, Chromatin and Epigenetics
Analysis of individual remodeled nucleosomes reveals decreased histone–DNA contacts created by hSWI/SNF
- Karim Bouazoune, Tina B. Miranda, Peter A. Jones, and Robert E. Kingston
Nucleic Acids Res. 2009; 37: 5279-5294.
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- Methods Online
A rapid simple approach to quantify chromosome conformation capture
- M. Abou El Hassan and R. Bremner
Nucleic Acids Res. 2009; 37: e35.
[Abstract]
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- Methods Online
DNA sampling: a method for probing protein binding at specific loci on bacterial chromosomes
- Matej Butala, Stephen J. W. Busby, and David J. Lee
Nucleic Acids Res. 2009; 37: e37.
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- Methods Online
Model-based redesign of global transcription regulation
- Javier Carrera, Guillermo Rodrigo, and Alfonso Jaramillo
Nucleic Acids Res. 2009; 37: e38.
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- Methods Online
A library-based method to rapidly analyse chromatin accessibility at multiple genomic regions
- Asjad Basheer, Harald Berger, Yazmid Reyes-Dominguez, Markus Gorfer, and Joseph Strauss
Nucleic Acids Res. 2009; 37: e42.
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- Methods Online
Manipulating transgenes using a chromosome vector
- Masashi Ikeno, Nobutaka Suzuki, Yoshinori Hasegawa, and Tsuneko Okazaki
Nucleic Acids Res. 2009; 37: e44.
[Abstract]
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- Methods Online
A rapid non-radioactive technique for measurement of repair synthesis in primary human fibroblasts by incorporation of ethynyl deoxyuridine (EdU)
- Siripan Limsirichaikul, Atsuko Niimi, Heather Fawcett, Alan Lehmann, Shunichi Yamashita, and Tomoo Ogi
Nucleic Acids Res. 2009; 37: e31.
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- Methods Online
Optimization of experimental design parameters for high-throughput chromatin immunoprecipitation studies
- Romina Ponzielli, Paul C. Boutros, Sigal Katz, Angelina Stojanova, Adam P. Hanley, Fereshteh Khosravi, Christina Bros, Igor Jurisica, and Linda Z. Penn
Nucleic Acids Res. 2008; 36: e144.
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- Methods Online
PAP-LMPCR for improved, allele-specific footprinting and automated chromatin fine structure analysis
- R. Ingram, C. Gao, J. LeBon, Q. Liu, R. J. Mayoral, S. S. Sommer, M. Hoogenkamp, A. D. Riggs, and C. Bonifer
Nucleic Acids Res. 2008; 36: e19.
[Abstract]
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- Methods Online
Kinetic studies of Escherichia coli AlkB using a new fluorescence-based assay for DNA demethylation
- Todd W. Roy and A. S. Bhagwat
Nucleic Acids Res. 2007; 35: e147.
[Abstract]
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