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Chromatin
This category presents techniques for analyzing chromatin organization in vivo, as well as, in vitro assays for the analysis and characterization of chromatin and its constituents including, but not limited to, in situ studies of nuclease sensitivity and protection, CHIP (chromatin immunoprecipitation), footprinting, nucleosome structure, characterization and preparation of chromatin (e.g. histone modifications) and chromatin-associated components (see also PROTEIN-NUCLEIC ACID INTERACTIONS).
Citations 11-20 of 25 total displayed.
- Methods Online
Choreography for nucleosomes: the conformational freedom of the nucleosomal filament and its limitations
- Mogens Engelhardt
Nucleic Acids Res. 2007; 35: e106.
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- Methods Online
Live cell imaging of repetitive DNA sequences via GFP-tagged polydactyl zinc finger proteins
- Beatrice I. Lindhout, Paul Fransz, Federico Tessadori, Tobias Meckel, Paul J.J. Hooykaas, and Bert J. van der Zaal
Nucleic Acids Res. 2007; 35: e107.
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- Methods Online
Engineered apoptotic nucleases for chromatin research
- Fei Xiao, Piotr Widlak, and William T. Garrard
Nucleic Acids Res. 2007; 35: e93.
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- Molecular Biology
Transcription factor distribution in Escherichia coli: studies with FNR protein
- David C. Grainger, Hirofumi Aiba, Douglas Hurd, Douglas F. Browning, and Stephen J. W. Busby
Nucleic Acids Res. 2007; 35: 269-278.
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[ Supplementary Data ]
- Methods Online
Absolute enrichment: gene set enrichment analysis for homeostatic systems
- Vishal Saxena, Dennis Orgill, and Isaac Kohane
Nucleic Acids Res. Advance Access published on November 27, 2006; doi: 10.1093/nar/gkl766.
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- Methods Online
MMASS: an optimized array-based method for assessing CpG island methylation
- Ashraf E. K. Ibrahim, Natalie P. Thorne, Katie Baird, Nuno L. Barbosa-Morais, Simon Tavaré, V. Peter Collins, Andrew H. Wyllie, Mark J. Arends, and James D. Brenton
Nucleic Acids Res. 2006; 34: e136.
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- Articles
The WD40-repeat protein Pwp1p associates in vivo with 25S ribosomal chromatin in a histone H4 tail-dependent manner
- Noriyuki Suka, Emiko Nakashima, Kaori Shinmyozu, Masumi Hidaka, and Hisato Jingami
Nucleic Acids Res. 2006; 34: 3555-3567.
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- Methods Online
The use of biotin tagging in Saccharomyces cerevisiae improves the sensitivity of chromatin immunoprecipitation
- Folkert J. van Werven and H. Th. Marc Timmers
Nucleic Acids Res. 2006; 34: e33.
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- Methods Online
Rapid, solid-phase based automated analysis of chromatin structure and transcription factor occupancy in living eukaryotic cells
- Richard Ingram, Hiromi Tagoh, Arthur D. Riggs, and Constanze Bonifer
Nucleic Acids Res. 2005; 33: e1.
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[ Supplementary Material ]
- Methods Online
A ‘one-pot’ assay for the accessibility of DNA in a nucleosome core particle
- Chenyi Wu and Andrew Travers
Nucleic Acids Res. 2004; 32: e122.
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