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Computational methods
Computational Methods include useful new routines and algorithms with applications to Bioinformatics such as new sequence manipulation and analysis methods. Also included are new methods of computational analysis of biological data that facilitate data interpretation.
Citations 1-10 of 282 total displayed.
- Methods Online
Detecting cis-regulatory binding sites for cooperatively binding proteins
- Liesbeth van Oeffelen, Pierre Cornelis, Wouter Van Delm, Fedor De Ridder, Bart De Moor, and Yves Moreau
Nucleic Acids Res. 2008; 36: e46.
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- Genomics
A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system
- Marcus B. Noyes, Xiangdong Meng, Atsuya Wakabayashi, Saurabh Sinha, Michael H. Brodsky, and Scot A. Wolfe
Nucleic Acids Res. 2008; 36: 2547-2560.
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- Methods Online
Transcriptome annotation using tandem SAGE tags
- Eric Rivals, Anthony Boureux, Mireille Lejeune, Florence Ottones, Oscar Pecharromàn Pérez, Jorma Tarhio, Fabien Pierrat, Florence Ruffle, Thérèse Commes, and Jacques Marti
Nucleic Acids Res. 2007; 35: e108.
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- Methods Online
Efficacy assessment of SNP sets for genome-wide disease association studies
- Andreas Wollstein, Alexander Herrmann, Michael Wittig, Michael Nothnagel, Andre Franke, Peter Nürnberg, Stefan Schreiber, Michael Krawczak, and Jochen Hampe
Nucleic Acids Res. 2007; 35: e113.
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- Methods Online
SAGETTARIUS: a program to reduce the number of tags mapped to multiple transcripts and to plan SAGE sequencing stages
- Laurent Bianchetti, Yan Wu, Eric Guerin, Frédéric Plewniak, and Olivier Poch
Nucleic Acids Res. 2007; 35: e122.
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- Computational Biology
A survey of bacterial insertion sequences using IScan
- Andreas Wagner, Christopher Lewis, and Manuel Bichsel
Nucleic Acids Res. 2007; 35: 5284-5293.
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- RNA
In silico detection of tRNA sequence features characteristic to aminoacyl-tRNA synthetase class membership
- Éena Jakó, Péter Ittzés, Áron Szenes, Ádám Kun, Eörs Szathmáry, and Gábor Pál
Nucleic Acids Res. 2007; 35: 5593-5609.
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- Computational Biology
A systematic strategy for large-scale analysis of genotype–phenotype correlations: identification of candidate genes involved in African trypanosomiasis
- Paul Fisher, Cornelia Hedeler, Katherine Wolstencroft, Helen Hulme, Harry Noyes, Stephen Kemp, Robert Stevens, and Andrew Brass
Nucleic Acids Res. 2007; 35: 5625-5633.
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- Methods Online
Meta-prediction of protein subcellular localization with reduced voting
- Jie Liu, Shuli Kang, Chuanning Tang, Lynda B.M. Ellis, and Tongbin Li
Nucleic Acids Res. 2007; 35: e96.
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- Methods Online
Toward a universal microarray: prediction of gene expression through nearest-neighbor probe sequence identification
- Thomas E. Royce, Joel S. Rozowsky, and Mark B. Gerstein
Nucleic Acids Res. 2007; 35: e99.
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