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Computational methods
Computational Methods include useful new routines and algorithms with applications to Bioinformatics such as new sequence manipulation and analysis methods. Also included are new methods of computational analysis of biological data that facilitate data interpretation.
Citations 91-100 of 364 total displayed.
- Methods Online
Meta-prediction of protein subcellular localization with reduced voting
- Jie Liu, Shuli Kang, Chuanning Tang, Lynda B.M. Ellis, and Tongbin Li
Nucleic Acids Res. 2007; 35: e96.
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- Methods Online
Toward a universal microarray: prediction of gene expression through nearest-neighbor probe sequence identification
- Thomas E. Royce, Joel S. Rozowsky, and Mark B. Gerstein
Nucleic Acids Res. 2007; 35: e99.
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- Computational Biology
Automated recognition of retroviral sequences in genomic data—RetroTector©
- Göran O. Sperber, Tove Airola, Patric Jern, and Jonas Blomberg
Nucleic Acids Res. 2007; 35: 4964-4976.
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- Computational Biology
Dissecting the action of an evolutionary conserved non-coding region on renin promoter activity
- Ralf Mrowka, Andreas Steege, Charlotte Kaps, Hanspeter Herzel, Bernd J. Thiele, Pontus B. Persson, and Nils Blüthgen
Nucleic Acids Res. 2007; 35: 5120-5129.
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- Genomics
Detecting laterally transferred genes: use of entropic clustering methods and genome position
- Rajeev K. Azad and Jeffrey G. Lawrence
Nucleic Acids Res. 2007; 35: 4629-4639.
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- Computational Biology
The identification of complete domains within protein sequences using accurate E-values for semi-global alignment
- Maricel G. Kann, Sergey L. Sheetlin, Yonil Park, Stephen H. Bryant, and John L. Spouge
Nucleic Acids Res. 2007; 35: 4678-4685.
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- Computational Biology
A correlation with exon expression approach to identify cis-regulatory elements for tissue-specific alternative splicing
- Debopriya Das, Tyson A. Clark, Anthony Schweitzer, Miki Yamamoto, Henry Marr, Josh Arribere, Simon Minovitsky, Alexander Poliakov, Inna Dubchak, John E. Blume, and John G. Conboy
Nucleic Acids Res. 2007; 35: 4845-4857.
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- Methods Online
General transfer matrix formalism to calculate DNA–protein–drug binding in gene regulation: application to OR operator of phage 
- Vladimir B. Teif
Nucleic Acids Res. 2007; 35: e80.
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- Genomics
Comparative analysis of bacterial genomes: identification of divergent regions in mycobacterial strains using an anchor-based approach
- Anchal Vishnoi, Rahul Roy, and Alok Bhattacharya
Nucleic Acids Res. 2007; 35: 3654-3667.
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- Computational Biology
Extracting binary signals from microarray time-course data
- Debashis Sahoo, David L. Dill, Rob Tibshirani, and Sylvia K. Plevritis
Nucleic Acids Res. 2007; 35: 3705-3712.
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