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Computational methods
Computational Methods include useful new routines and algorithms with applications to Bioinformatics such as new sequence manipulation and analysis methods. Also included are new methods of computational analysis of biological data that facilitate data interpretation.
Citations 121-130 of 364 total displayed.
- Genomics
Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis
- M. Thomas P. Gilbert, Jonas Binladen, Webb Miller, Carsten Wiuf, Eske Willerslev, Hendrik Poinar, John E. Carlson, James H. Leebens-Mack, and Stephan C. Schuster
Nucleic Acids Res. 2007; 35: 1-10.
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- Computational Biology
Operon prediction in Pyrococcus furiosus
- Thao T. Tran, Phuongan Dam, Zhengchang Su, Farris L. Poole, II, Michael W. W. Adams, G. Tong Zhou, and Ying Xu
Nucleic Acids Res. 2007; 35: 11-20.
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- Computational Biology
Epitope mapping using combinatorial phage-display libraries: a graph-based algorithm
- Itay Mayrose, Tomer Shlomi, Nimrod D. Rubinstein, Jonathan M. Gershoni, Eytan Ruppin, Roded Sharan, and Tal Pupko
Nucleic Acids Res. 2007; 35: 69-78.
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- RNA
Different levels of alternative splicing among eukaryotes
- Eddo Kim, Alon Magen, and Gil Ast
Nucleic Acids Res. 2007; 35: 125-131.
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- Computational Biology
Nonlinear differential equation model for quantification of transcriptional regulation applied to microarray data of Saccharomyces cerevisiae
- Tra Thi Vu and Jiri Vohradsky
Nucleic Acids Res. 2007; 35: 279-287.
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- Computational Biology
Operon prediction using both genome-specific and general genomic information
- Phuongan Dam, Victor Olman, Kyle Harris, Zhengchang Su, and Ying Xu
Nucleic Acids Res. 2007; 35: 288-298.
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- Computational Biology
Bhageerath: an energy based web enabled computer software suite for limiting the search space of tertiary structures of small globular proteins
- B. Jayaram, Kumkum Bhushan, Sandhya R. Shenoy, Pooja Narang, Surojit Bose, Praveen Agrawal, Debashish Sahu, and Vidhu Pandey
Nucleic Acids Res. 2006; 34: 6195-6204.
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- Computational Biology
Identification of alternative 5'/3' splice sites based on the mechanism of splice site competition
- Huiyu Xia, Jianning Bi, and Yanda Li
Nucleic Acids Res. 2006; 34: 6305-6313.
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- Methods Online
Absolute enrichment: gene set enrichment analysis for homeostatic systems
- Vishal Saxena, Dennis Orgill, and Isaac Kohane
Nucleic Acids Res. 2006; 34: e151.
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- Methods Online
Rapid detection of similarity in protein structure and function through contact metric distances
- Andreas Martin Lisewski and Olivier Lichtarge
Nucleic Acids Res. 2006; 34: e152.
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