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Computational methods
Computational Methods include useful new routines and algorithms with applications to Bioinformatics such as new sequence manipulation and analysis methods. Also included are new methods of computational analysis of biological data that facilitate data interpretation.
Citations 131-140 of 359 total displayed.
- Computational Biology
MetaGene: prokaryotic gene finding from environmental genome shotgun sequences
- Hideki Noguchi, Jungho Park, and Toshihisa Takagi
Nucleic Acids Res. 2006; 34: 5623-5630.
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- Computational Biology
Rational design and rapid screening of antisense oligonucleotides for prokaryotic gene modulation
- Yu Shao, Yan Wu, Chi Yu Chan, Kathleen McDonough, and Ye Ding
Nucleic Acids Res. 2006; 34: 5660-5669.
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- Computational Biology
A graph-based motif detection algorithm models complex nucleotide dependencies in transcription factor binding sites
- Brian T. Naughton, Eugene Fratkin, Serafim Batzoglou, and Douglas L. Brutlag
Nucleic Acids Res. 2006; 34: 5730-5739.
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- Computational Biology
Phage_Finder: Automated identification and classification of prophage regions in complete bacterial genome sequences
- Derrick E. Fouts
Nucleic Acids Res. 2006; 34: 5839-5851.
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- Computational Biology
Multiple alignment of protein sequences with repeats and rearrangements
- Tu Minh Phuong, Chuong B. Do, Robert C. Edgar, and Serafim Batzoglou
Nucleic Acids Res. 2006; 34: 5932-5942.
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- Computational Biology
Identification of core promoter modules in Drosophila and their application in accurate transcription start site prediction
- Uwe Ohler
Nucleic Acids Res. 2006; 34: 5943-5950.
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- Computational Biology
Retrieval accuracy, statistical significance and compositional similarity in protein sequence database searches
- Yi-Kuo Yu, E. Michael Gertz, Richa Agarwala, Alejandro A. Schäffer, and Stephen F. Altschul
Nucleic Acids Res. 2006; 34: 5966-5973.
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- Methods Online
Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection
- Dylan Chivian and David Baker
Nucleic Acids Res. 2006; 34: e112.
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- Methods Online
AccuTyping: new algorithms for automated analysis of data from high-throughput genotyping with oligonucleotide microarrays
- Guohong Hu, Hui-Yun Wang, Danielle M. Greenawalt, Marco A. Azaro, Minjie Luo, Irina V. Tereshchenko, Xiangfeng Cui, Qifeng Yang, Richeng Gao, Li Shen, and Honghua Li
Nucleic Acids Res. 2006; 34: e116.
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- Methods Online
Using RNA secondary structures to guide sequence motif finding towards single-stranded regions
- Michael Hiller, Rainer Pudimat, Anke Busch, and Rolf Backofen
Nucleic Acids Res. 2006; 34: e117.
[Abstract]
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