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Computational methods
Computational Methods include useful new routines and algorithms with applications to Bioinformatics such as new sequence manipulation and analysis methods. Also included are new methods of computational analysis of biological data that facilitate data interpretation.
Citations 141-150 of 359 total displayed.
- Computational Biology
PLPD: reliable protein localization prediction from imbalanced and overlapped datasets
- KiYoung Lee, Dae-Won Kim, DoKyun Na, Kwang H. Lee, and Doheon Lee
Nucleic Acids Res. 2006; 34: 4655-4666.
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- Computational Biology
Computational analysis of tissue-specific combinatorial gene regulation: predicting interaction between transcription factors in human tissues
- Xueping Yu, Jimmy Lin, Donald J. Zack, and Jiang Qian
Nucleic Acids Res. 2006; 34: 4925-4936.
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- Methods Online
Identifying functional gene sets from hierarchically clustered expression data: map of abiotic stress regulated genes in Arabidopsis thaliana
- Matti Kankainen, Günter Brader, Petri Törönen, E. Tapio Palva, and Liisa Holm
Nucleic Acids Res. 2006; 34: e124.
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- Methods Online
3D reconstruction and comparison of shapes of DNA minicircles observed by cryo-electron microscopy
- Arnaud Amzallag, Cédric Vaillant, Mathews Jacob, Michael Unser, Jan Bednar, Jason D. Kahn, Jacques Dubochet, Andrzej Stasiak, and John H. Maddocks
Nucleic Acids Res. 2006; 34: e125.
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- Computational Biology
snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome
- Jian-Hua Yang, Xiao-Chen Zhang, Zhan-Peng Huang, Hui Zhou, Mian-Bo Huang, Shu Zhang, Yue-Qin Chen, and Liang-Hu Qu
Nucleic Acids Res. 2006; 34: 5112-5123.
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- Computational Biology
Automated identification of multiple micro-organisms from resequencing DNA microarrays
- Anthony P. Malanoski, Baochuan Lin, Zheng Wang, Joel M. Schnur, and David A. Stenger
Nucleic Acids Res. 2006; 34: 5300-5311.
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- Methods Online
PLPD: reliable protein localization prediction from imbalanced and overlapped datasets
- KiYoung Lee, Dae-Won Kim, DoKyun Na, Kwang H. Lee, and Doheon Lee
Nucleic Acids Res. Advance Access published on September 11, 2006; doi: 10.1093/nar/gkl638.
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- Methods Online
Non-linear analysis of GeneChip arrays
- Diana Abdueva, Dmitriy Skvortsov, and Simon Tavaré
Nucleic Acids Res. 2006; 34: e105.
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- Articles
Computational detection of allergenic proteins attains a new level of accuracy with in silico variable-length peptide extraction and machine learning
- D. Soeria-Atmadja, T. Lundell, M. G. Gustafsson, and U. Hammerling
Nucleic Acids Res. 2006; 34: 3779-3793.
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- Articles
Protein binding site prediction using an empirical scoring function
- Shide Liang, Chi Zhang, Song Liu, and Yaoqi Zhou
Nucleic Acids Res. 2006; 34: 3698-3707.
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