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Computational methods
Computational Methods include useful new routines and algorithms with applications to Bioinformatics such as new sequence manipulation and analysis methods. Also included are new methods of computational analysis of biological data that facilitate data interpretation.
Citations 151-160 of 359 total displayed.
- Articles
Genome-wide screening for cis-regulatory variation using a classical diallel crossing scheme
- Raphaël Kiekens, Annelies Vercauteren, Beatrijs Moerkerke, Els Goetghebeur, Hilde Van Den Daele, Roel Sterken, Martin Kuiper, Fred van Eeuwijk, and Marnik Vuylsteke
Nucleic Acids Res. 2006; 34: 3677-3686.
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- Articles
Protein structure database search and evolutionary classification
- Jinn-Moon Yang and Chi-Hua Tung
Nucleic Acids Res. 2006; 34: 3646-3659.
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- Articles
Genomic scale sub-family assignment of protein domains
- Julian Gough
Nucleic Acids Res. 2006; 34: 3625-3633.
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- Articles
Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2
- Jonathan Livny, Anja Brencic, Stephen Lory, and Matthew K. Waldor
Nucleic Acids Res. 2006; 34: 3484-3493.
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- Articles
SLiMDisc: short, linear motif discovery, correcting for common evolutionary descent
- Norman E. Davey, Denis C. Shields, and Richard J. Edwards
Nucleic Acids Res. 2006; 34: 3546-3554.
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AGMIAL: implementing an annotation strategy for prokaryote genomes as a distributed system
- K. Bryson, V. Loux, R. Bossy, P. Nicolas, S. Chaillou, M. van de Guchte, S. Penaud, E. Maguin, M. Hoebeke, P. Bessières, and J-F Gibrat
Nucleic Acids Res. 2006; 34: 3533-3545.
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Detecting non-orthology in the COGs database and other approaches grouping orthologs using genome-specific best hits
- Christophe Dessimoz, Brigitte Boeckmann, Alexander C. J. Roth, and Gaston H. Gonnet
Nucleic Acids Res. 2006; 34: 3309-3316.
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- Methods Online
Cytoplasmic expression systems triggered by mRNA yield increased gene expression in post-mitotic neurons
- Paul J. Farrow, Lee B. Barrett, Mark Stevenson, Kerry D. Fisher, Jonathan Finn, Rachel Spice, Michael A. Allan, Martin Berry, Ann Logan, Leonard W. Seymour, and Martin L. Read
Nucleic Acids Res. 2006; 34: e80.
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- Articles
Protein complex compositions predicted by structural similarity
- Fred P. Davis, Hannes Braberg, Min-Yi Shen, Ursula Pieper, Andrej Sali, and M.S. Madhusudhan
Nucleic Acids Res. 2006; 34: 2943-2952.
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- Articles
Yeast Protein Interactome topology provides framework for coordinated-functionality
- André X. C. N. Valente and Michael E. Cusick
Nucleic Acids Res. 2006; 34: 2812-2819.
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