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Computational methods
Computational Methods include useful new routines and algorithms with applications to Bioinformatics such as new sequence manipulation and analysis methods. Also included are new methods of computational analysis of biological data that facilitate data interpretation.
Citations 161-170 of 359 total displayed.
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Strong physical constraints on sequence-specific target location by proteins on DNA molecules
- Henrik Flyvbjerg, Steven A. Keatch, and David T.F. Dryden
Nucleic Acids Res. 2006; 34: 2550-2557.
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- Methods Online
MicroRNA enrichment among short ‘ultraconserved’ sequences in insects
- T. Tran, P. Havlak, and J. Miller
Nucleic Acids Res. 2006; 34: e65.
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The initial step of DNA hairpin folding: a kinetic analysis using fluorescence correlation spectroscopy
- Jiho Kim, Sören Doose, Hannes Neuweiler, and Markus Sauer
Nucleic Acids Res. 2006; 34: 2516-2527.
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Automated extraction and classification of RNA tertiary structure cyclic motifs
- Sébastien Lemieux and François Major
Nucleic Acids Res. 2006; 34: 2340-2346.
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Spectral clustering of protein sequences
- Alberto Paccanaro, James A. Casbon, and Mansoor A. S. Saqi
Nucleic Acids Res. 2006; 34: 1571-1580.
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A data-driven clustering method for time course gene expression data
- Ping Ma, Cristian I. Castillo-Davis, Wenxuan Zhong, and Jun S. Liu
Nucleic Acids Res. 2006; 34: 1261-1269.
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- Methods Online
New softwares for automated microsatellite marker development
- Wellington Martins, Daniel de Sousa, Karina Proite, Patrícia Guimarães, Marcio Moretzsohn, and David Bertioli
Nucleic Acids Res. 2006; 34: e31.
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Nucleic acid visualization with UCSF Chimera
- Gregory S. Couch, Donna K. Hendrix, and Thomas E. Ferrin
Nucleic Acids Res. 2006; 34: e29.
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- Articles
Computational inference and experimental validation of the nitrogen assimilation regulatory network in cyanobacterium Synechococcus sp. WH 8102
- Zhengchang Su, Fenglou Mao, Phuongan Dam, Hongwei Wu, Victor Olman, Ian T. Paulsen, Brian Palenik, and Ying Xu
Nucleic Acids Res. 2006; 34: 1050-1065.
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- Articles
TFAM detects co-evolution of tRNA identity rules with lateral transfer of histidyl-tRNA synthetase
- David H. Ardell and Siv G. E. Andersson
Nucleic Acids Res. 2006; 34: 893-904.
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