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Computational methods
Computational Methods include useful new routines and algorithms with applications to Bioinformatics such as new sequence manipulation and analysis methods. Also included are new methods of computational analysis of biological data that facilitate data interpretation.
Citations 171-180 of 359 total displayed.
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Genome-wide prediction and characterization of interactions between transcription factors in Saccharomyces cerevisiae
- Xueping Yu, Jimmy Lin, Tomohiro Masuda, Noriko Esumi, Donald J. Zack, and Jiang Qian
Nucleic Acids Res. 2006; 34: 917-927.
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- Articles
Hierarchical clustering algorithm for comprehensive orthologous-domain classification in multiple genomes
- Ikuo Uchiyama
Nucleic Acids Res. 2006; 34: 647-658.
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- Methods Online
A systematic approach to infer biological relevance and biases of gene network structures
- Alexey V. Antonov, Igor V. Tetko, and Hans W. Mewes
Nucleic Acids Res. 2006; 34: e6.
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Application of a superword array in genome assembly
- Xiaoqiu Huang, Shiaw-Pyng Yang, Asif T. Chinwalla, LaDeana W. Hillier, Patrick Minx, Elaine R. Mardis, and Richard K. Wilson
Nucleic Acids Res. 2006; 34: 201-205.
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Molecular flexibility in ab initio drug docking to DNA: binding-site and binding-mode transitions in all-atom Monte Carlo simulations
- Remo Rohs, Itai Bloch, Heinz Sklenar, and Zippora Shakked
Nucleic Acids Res. 2005; 33: 7048-7057.
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Improved alignment of nucleosome DNA sequences using a mixture model
- Ji-Ping Z. Wang and Jonathan Widom
Nucleic Acids Res. 2005; 33: 6743-6755.
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Gene identification in novel eukaryotic genomes by self-training algorithm
- Alexandre Lomsadze, Vardges Ter-Hovhannisyan, Yury O. Chernoff, and Mark Borodovsky
Nucleic Acids Res. 2005; 33: 6494-6506.
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- Articles
Kernel-based machine learning protocol for predicting DNA-binding proteins
- Nitin Bhardwaj, Robert E. Langlois, Guijun Zhao, and Hui Lu
Nucleic Acids Res. 2005; 33: 6486-6493.
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- Articles
A coarse graining approach to determine nucleic acid structures from small angle neutron scattering profiles in solution
- J. Zhou, S. Krueger, and S. K. Gregurick
Nucleic Acids Res. 2005; 33: 6361-6371.
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- Articles
Information theory based T7-like promoter models: classification of bacteriophages and differential evolution of promoters and their polymerases
- Zehua Chen and Thomas D. Schneider
Nucleic Acids Res. 2005; 33: 6172-6187.
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