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Computational methods
Computational Methods include useful new routines and algorithms with applications to Bioinformatics such as new sequence manipulation and analysis methods. Also included are new methods of computational analysis of biological data that facilitate data interpretation.
Citations 181-190 of 364 total displayed.
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Improved alignment of nucleosome DNA sequences using a mixture model
- Ji-Ping Z. Wang and Jonathan Widom
Nucleic Acids Res. 2005; 33: 6743-6755.
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Gene identification in novel eukaryotic genomes by self-training algorithm
- Alexandre Lomsadze, Vardges Ter-Hovhannisyan, Yury O. Chernoff, and Mark Borodovsky
Nucleic Acids Res. 2005; 33: 6494-6506.
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Kernel-based machine learning protocol for predicting DNA-binding proteins
- Nitin Bhardwaj, Robert E. Langlois, Guijun Zhao, and Hui Lu
Nucleic Acids Res. 2005; 33: 6486-6493.
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A coarse graining approach to determine nucleic acid structures from small angle neutron scattering profiles in solution
- J. Zhou, S. Krueger, and S. K. Gregurick
Nucleic Acids Res. 2005; 33: 6361-6371.
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Information theory based T7-like promoter models: classification of bacteriophages and differential evolution of promoters and their polymerases
- Zehua Chen and Thomas D. Schneider
Nucleic Acids Res. 2005; 33: 6172-6187.
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Predicting candidate genomic sequences that correspond to synthetic functional RNA motifs
- Uri Laserson, Hin Hark Gan, and Tamar Schlick
Nucleic Acids Res. 2005; 33: 6057-6069.
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Selection of optimal oligonucleotide probes for microarrays using multiple criteria, global alignment and parameter estimation
- Xingyuan Li, Zhili He, and Jizhong Zhou
Nucleic Acids Res. 2005; 33: 6114-6123.
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Protein–DNA binding specificity predictions with structural models
- Alexandre V. Morozov, James J. Havranek, David Baker, and Eric D. Siggia
Nucleic Acids Res. 2005; 33: 5781-5798.
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Draft versus finished sequence data for DNA and protein diagnostic signature development
- Shea N. Gardner, Marisa W. Lam, Jason R. Smith, Clinton L. Torres, and Tom R. Slezak
Nucleic Acids Res. 2005; 33: 5838-5850.
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- Articles
Abundance of correctly folded RNA motifs in sequence space, calculated on computational grids
- Rob Knight, Hans De Sterck, Rob Markel, Sandra Smit, Alexander Oshmyansky, and Michael Yarus
Nucleic Acids Res. 2005; 33: 5924-5935.
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