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Computational methods
Computational Methods include useful new routines and algorithms with applications to Bioinformatics such as new sequence manipulation and analysis methods. Also included are new methods of computational analysis of biological data that facilitate data interpretation.
Citations 201-210 of 359 total displayed.
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Predicting specificity-determining residues in two large eukaryotic transcription factor families
- Jason E. Donald and Eugene I. Shakhnovich
Nucleic Acids Res. 2005; 33: 4455-4465.
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miBLAST: scalable evaluation of a batch of nucleotide sequence queries with BLAST
- You Jung Kim, Andrew Boyd, Brian D. Athey, and Jignesh M. Patel
Nucleic Acids Res. 2005; 33: 4335-4344.
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Uracil content of 16S rRNA of thermophilic and psychrophilic prokaryotes correlates inversely with their optimal growth temperatures
- Amit N. Khachane, Kenneth N. Timmis, and Vítor A. P. Martins dos Santos
Nucleic Acids Res. 2005; 33: 4016-4022.
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A sequence sub-sampling algorithm increases the power to detect distant homologues
- Catrióna R. Johnston and Denis C. Shields
Nucleic Acids Res. 2005; 33: 3772-3778.
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A computer program for the estimation of protein and nucleic acid sequence diversity in random point mutagenesis libraries
- Michael J. Volles and Peter T. Lansbury, Jr
Nucleic Acids Res. 2005; 33: 3667-3677.
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Codon usage comparison of novel genes in clinical isolates of Haemophilus influenzae
- John Gladitz, Kai Shen, Patricia Antalis, Fen Ze Hu, J. Christopher Post, and Garth D. Ehrlich
Nucleic Acids Res. 2005; 33: 3644-3658.
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Human microRNA prediction through a probabilistic co-learning model of sequence and structure
- Jin-Wu Nam, Ki-Roo Shin, Jinju Han, Yoontae Lee, V. Narry Kim, and Byoung-Tak Zhang
Nucleic Acids Res. 2005; 33: 3570-3581.
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Identification of novel restriction endonuclease-like fold families among hypothetical proteins
- Lisa N. Kinch, Krzysztof Ginalski, Leszek Rychlewski, and Nick V. Grishin
Nucleic Acids Res. 2005; 33: 3598-3605.
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Identification of regulatory targets of tissue-specific transcription factors: application to retina-specific gene regulation
- Jiang Qian, Noriko Esumi, Yangjian Chen, Qingliang Wang, Itay Chowers, and Donald J. Zack
Nucleic Acids Res. 2005; 33: 3479-3491.
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SW-ARRAY: a dynamic programming solution for the identification of copy-number changes in genomic DNA using array comparative genome hybridization data
- Thomas S. Price, Regina Regan, Richard Mott, Åsa Hedman, Ben Honey, Rachael J. Daniels, Lee Smith, Andy Greenfield, Ana Tiganescu, Veronica Buckle, Nicki Ventress, Helena Ayyub, Anita Salhan, Susana Pedraza-Diaz, John Broxholme, Jiannis Ragoussis, Douglas R. Higgs, Jonathan Flint, and Samantha J. L. Knight
Nucleic Acids Res. 2005; 33: 3455-3464.
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