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Computational methods
Computational Methods include useful new routines and algorithms with applications to Bioinformatics such as new sequence manipulation and analysis methods. Also included are new methods of computational analysis of biological data that facilitate data interpretation.
Citations 211-220 of 359 total displayed.
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Predicting non-coding RNA genes in Escherichia coli with boosted genetic programming
- Pål Sætrom, Ragnhild Sneve, Knut I. Kristiansen, Ola Snøve, Jr, Thomas Grünfeld, Torbjørn Rognes, and Erling Seeberg
Nucleic Acids Res. 2005; 33: 3263-3270.
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Prediction of solvent accessibility and sites of deleterious mutations from protein sequence
- Huiling Chen and Huan-Xiang Zhou
Nucleic Acids Res. 2005; 33: 3193-3199.
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oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes
- Shannan J. Ho Sui, James R. Mortimer, David J. Arenillas, Jochen Brumm, Christopher J. Walsh, Brian P. Kennedy, and Wyeth W. Wasserman
Nucleic Acids Res. 2005; 33: 3154-3164.
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GeMS: an advanced software package for designing synthetic genes
- Sebastian Jayaraj, Ralph Reid, and Daniel V. Santi
Nucleic Acids Res. 2005; 33: 3011-3016.
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Prediction of functional modules based on comparative genome analysis and Gene Ontology application
- Hongwei Wu, Zhengchang Su, Fenglou Mao, Victor Olman, and Ying Xu
Nucleic Acids Res. 2005; 33: 2822-2837.
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Automated band mapping in electrophoretic gel images using background information
- Troy Zerr and Steven Henikoff
Nucleic Acids Res. 2005; 33: 2806-2812.
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Identification of brassinosteroid-related genes by means of transcript co-response analyses
- Janina Lisso, Dirk Steinhauser, Thomas Altmann, Joachim Kopka, and Carsten Müssig
Nucleic Acids Res. 2005; 33: 2685-2696.
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A mathematical and computational framework for quantitative comparison and integration of large-scale gene expression data
- Christopher E. Hart, Lucas Sharenbroich, Benjamin J. Bornstein, Diane Trout, Brandon King, Eric Mjolsness, and Barbara J. Wold
Nucleic Acids Res. 2005; 33: 2580-2594.
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Nebulon: a system for the inference of functional relationships of gene products from the rearrangement of predicted operons
- Sarath Chandra Janga, Julio Collado-Vides, and Gabriel Moreno-Hagelsieb
Nucleic Acids Res. 2005; 33: 2521-2530.
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Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments
- Aurélie Lescoute, Neocles B. Leontis, Christian Massire, and Eric Westhof
Nucleic Acids Res. 2005; 33: 2395-2409.
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