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Computational methods
Computational Methods include useful new routines and algorithms with applications to Bioinformatics such as new sequence manipulation and analysis methods. Also included are new methods of computational analysis of biological data that facilitate data interpretation.
Citations 261-270 of 359 total displayed.
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Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome
- Peter Schattner, Wayne A. Decatur, Carrie A. Davis, Manuel Ares, Jr, Maurille J. Fournier, and Todd M. Lowe
Nucleic Acids Res. 2004; 32: 4281-4296.
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BOD: a customizable bioinformatics on demand system accommodating multiple steps and parallel tasks
- Li-An Qiao, Jing Zhu, Qingyan Liu, Tao Zhu, Chi Song, Wei Lin, Guozhu Wei, Lisen Mu, Jiang Tao, Nanming Zhao, Guangwen Yang, and Xiangjun Liu
Nucleic Acids Res. 2004; 32: 4175-4181.
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Mathematical algorithm for discovering states of expression from direct genetic comparison by microarrays
- Hassan M. Fathallah-Shaykh, Bin He, Li-Juan Zhao, and Aamir Badruddin
Nucleic Acids Res. 2004; 32: 3807-3814.
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Discovery of sequence motifs related to coexpression of genes using evolutionary computation
- Gary B. Fogel, Dana G. Weekes, Gabor Varga, Ernst R. Dow, Harry B. Harlow, Jude E. Onyia, and Chen Su
Nucleic Acids Res. 2004; 32: 3826-3835.
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Genome-wide operon prediction in Staphylococcus aureus
- Liangsu Wang, John D. Trawick, Robert Yamamoto, and Carlos Zamudio
Nucleic Acids Res. 2004; 32: 3689-3702.
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Sequence-based prediction of protein domains
- Jinfeng Liu and Burkhard Rost
Nucleic Acids Res. 2004; 32: 3522-3530.
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New strategy for the representation and the integration of biomolecular knowledge at a cellular scale
- Roland Barriot, Jérôme Poix, Alexis Groppi, Aurélien Barré, Nicolas Goffard, David Sherman, Isabelle Dutour, and Antoine de Daruvar
Nucleic Acids Res. 2004; 32: 3581-3589.
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RNAProfile: an algorithm for finding conserved secondary structure motifs in unaligned RNA sequences
- Giulio Pavesi, Giancarlo Mauri, Marco Stefani, and Graziano Pesole
Nucleic Acids Res. 2004; 32: 3258-3269.
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PeerGAD: a peer-review-based and community-centric web application for viewing and annotating prokaryotic genome sequences
- Mark D. D’Ascenzo, Alan Collmer, and Gregory B. Martin
Nucleic Acids Res. 2004; 32: 3124-3135.
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- Articles
Identification of sparsely distributed clusters of cis-regulatory elements in sets of co-expressed genes
- Gabriel Kreiman
Nucleic Acids Res. 2004; 32: 2889-2900.
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