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Computational methods


Computational Methods include useful new routines and algorithms with applications to Bioinformatics such as new sequence manipulation and analysis methods. Also included are new methods of computational analysis of biological data that facilitate data interpretation.


Citations 281-290 of 359 total displayed.

Past content

Articles
Bioinformatical assay of human gene morbidity
Fyodor A. Kondrashov, Aleksey Y. Ogurtsov, and Alexey S. Kondrashov
Nucleic Acids Res. 2004; 32: 1731-1737. [Abstract] [Full text] [Print PDF]  

Articles
Efficient RNA interference depends on global context of the target sequence: quantitative analysis of silencing efficiency using Eulerian graph representation of siRNA
Petr Pancoska, Zdenek Moravek, and Ute M. Moll
Nucleic Acids Res. 2004; 32: 1469-1479. [Abstract] [Full text] [Print PDF]  

Articles
Paradigms for computational nucleic acid design
Robert M. Dirks, Milo Lin, Erik Winfree, and Niles A. Pierce
Nucleic Acids Res. 2004; 32: 1392-1403. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

Articles
Detection of functional DNA motifs via statistical over-representation
Martin C. Frith, Yutao Fu, Liqun Yu, Jiang-Fan Chen, Ulla Hansen, and Zhiping Weng
Nucleic Acids Res. 2004; 32: 1372-1381. [Abstract] [Full text] [Print PDF]  

Articles
A gene-specific DNA sequencing chip for exploring molecular evolutionary change
Olivier Fedrigo and Gavin Naylor
Nucleic Acids Res. 2004; 32: 1208-1213. [Abstract] [Full text] [Print PDF]  

Articles
The importance of intrinsic disorder for protein phosphorylation
Lilia M. Iakoucheva, Predrag Radivojac, Celeste J. Brown, Timothy R. O’Connor, Jason G. Sikes, Zoran Obradovic, and A. Keith Dunker
Nucleic Acids Res. 2004; 32: 1037-1049. [Abstract] [Full text] [Print PDF]  

Articles
Gene structure conservation aids similarity based gene prediction
Irmtraud M. Meyer and Richard Durbin
Nucleic Acids Res. 2004; 32: 776-783. [Abstract] [Full text] [Print PDF]  

Articles
Guidelines for incorporating non-perfectly matched oligonucleotides into target-specific hybridization probes for a DNA microarray
Inhan Lee, Alan A. Dombkowski, and Brian D. Athey
Nucleic Acids Res. 2004; 32: 681-690. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

Articles
Protein structure prediction using sparse dipolar coupling data
Youxing Qu, Jun-tao Guo, Victor Olman, and Ying Xu
Nucleic Acids Res. 2004; 32: 551-561. [Abstract] [Full text] [Print PDF]  

Articles
Statistical resynchronization and Bayesian detection of periodically expressed genes
Xin Lu, Wen Zhang, Zhaohui S. Qin, Kurt E. Kwast, and Jun S. Liu
Nucleic Acids Res. 2004; 32: 447-455. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

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