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Computational methods
Computational Methods include useful new routines and algorithms with applications to Bioinformatics such as new sequence manipulation and analysis methods. Also included are new methods of computational analysis of biological data that facilitate data interpretation.
Citations 311-320 of 359 total displayed.
- NAR Methods Online
A non-parametric model for transcription factor binding sites
- Oliver D. King and Frederick P. Roth
Nucleic Acids Res. 2003; 31: e116.
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EXCAVATOR: a computer program for efficiently mining gene expression data
- Dong Xu, Victor Olman, Li Wang, and Ying Xu
Nucleic Acids Res. 2003; 31: 5582-5589.
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- Articles
PANDORA: keyword-based analysis of protein sets by integration of annotation sources
- Noam Kaplan, Avishay Vaaknin, and Michal Linial
Nucleic Acids Res. 2003; 31: 5617-5626.
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- Articles
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
- Brian J. Haas, Arthur L. Delcher, Stephen M. Mount, Jennifer R. Wortman, Roger K. Smith, Jr, Linda I. Hannick, Rama Maiti, Catherine M. Ronning, Douglas B. Rusch, Christopher D. Town, Steven L. Salzberg, and Owen White
Nucleic Acids Res. 2003; 31: 5654-5666.
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Patterns of nucleotide substitution, insertion and deletion in the human genome inferred from pseudogenes
- Zhaolei Zhang and Mark Gerstein
Nucleic Acids Res. 2003; 31: 5338-5348.
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- NAR Methods Online
MGView: an alignment and visualization tool to enhance gap closure of microbial genomes
- Lisa Herron-Olson, John Freeman, Qing Zhang, Ernest F. Retzel, and Vivek Kapur
Nucleic Acids Res. 2003; 31: e106.
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3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures
- Xiang-Jun Lu and Wilma K. Olson
Nucleic Acids Res. 2003; 31: 5108-5121.
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- Articles
RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space
- Carlos M. Duarte, Leven M. Wadley, and Anna Marie Pyle
Nucleic Acids Res. 2003; 31: 4755-4761.
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Microenvironment analysis and identification of magnesium binding sites in RNA
- D. Rey Banatao, Russ B. Altman, and Teri E. Klein
Nucleic Acids Res. 2003; 31: 4450-4460.
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- Articles
The computational analysis of scientific literature to define and recognize gene expression clusters
- Soumya Raychaudhuri, Jeffrey T. Chang, Farhad Imam, and Russ B. Altman
Nucleic Acids Res. 2003; 31: 4553-4560.
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