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Computational methods
Computational Methods include useful new routines and algorithms with applications to Bioinformatics such as new sequence manipulation and analysis methods. Also included are new methods of computational analysis of biological data that facilitate data interpretation.
Citations 321-330 of 364 total displayed.
- NAR Methods Online
MGView: an alignment and visualization tool to enhance gap closure of microbial genomes
- Lisa Herron-Olson, John Freeman, Qing Zhang, Ernest F. Retzel, and Vivek Kapur
Nucleic Acids Res. 2003; 31: e106.
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3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures
- Xiang-Jun Lu and Wilma K. Olson
Nucleic Acids Res. 2003; 31: 5108-5121.
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RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space
- Carlos M. Duarte, Leven M. Wadley, and Anna Marie Pyle
Nucleic Acids Res. 2003; 31: 4755-4761.
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Microenvironment analysis and identification of magnesium binding sites in RNA
- D. Rey Banatao, Russ B. Altman, and Teri E. Klein
Nucleic Acids Res. 2003; 31: 4450-4460.
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The computational analysis of scientific literature to define and recognize gene expression clusters
- Soumya Raychaudhuri, Jeffrey T. Chang, Farhad Imam, and Russ B. Altman
Nucleic Acids Res. 2003; 31: 4553-4560.
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Computational identification of protein coding potential of conserved sequence tags through cross-species evolutionary analysis
- Flavio Mignone, Giorgio Grillo, Sabino Liuni, and Graziano Pesole
Nucleic Acids Res. 2003; 31: 4639-4645.
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Correcting errors in shotgun sequences
- Martti T. Tammi, Erik Arner, Ellen Kindlund, and Björn Andersson
Nucleic Acids Res. 2003; 31: 4663-4672.
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Comparative protein structure modeling by iterative alignment, model building and model assessment
- Bino John and Andrej Sali
Nucleic Acids Res. 2003; 31: 3982-3992.
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OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach
- Jean-Marie Rouillard, Michael Zuker, and Erdogan Gulari
Nucleic Acids Res. 2003; 31: 3057-3062.
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DNA sequence representation without degeneracy
- Stephen S. -T. Yau, Jiasong Wang, Amir Niknejad, Chaoxiao Lu, Ning Jin, and Yee-Kin Ho
Nucleic Acids Res. 2003; 31: 3078-3080.
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