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Computational methods
Computational Methods include useful new routines and algorithms with applications to Bioinformatics such as new sequence manipulation and analysis methods. Also included are new methods of computational analysis of biological data that facilitate data interpretation.
Citations 331-340 of 359 total displayed.
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Conservation of human alternative splice events in mouse
- T. A. Thanaraj, Francis Clark, and Juha Muilu
Nucleic Acids Res. 2003; 31: 2544-2552.
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- Articles
GenDB—an open source genome annotation system for prokaryote genomes
- Folker Meyer, Alexander Goesmann, Alice C. McHardy, Daniela Bartels, Thomas Bekel, Jörn Clausen, Jörn Kalinowski, Burkhard Linke, Oliver Rupp, Robert Giegerich, and Alfred Pühler
Nucleic Acids Res. 2003; 31: 2187-2195.
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- Articles
Revisiting the codon adaptation index from a whole-genome perspective: analyzing the relationship between gene expression and codon occurrence in yeast using a variety of models
- Ronald Jansen, Harmen J. Bussemaker, and Mark Gerstein
Nucleic Acids Res. 2003; 31: 2242-2251.
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- Articles
Absolute mRNA concentrations from sequence-specific calibration of oligonucleotide arrays
- Doeke Hekstra, Alexander R. Taussig, Marcelo Magnasco, and Felix Naef
Nucleic Acids Res. 2003; 31: 1962-1968.
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- Articles
An approach to identify over-represented cis-elements in related sequences
- Jiashun Zheng, Jiajin Wu, and Zhirong Sun
Nucleic Acids Res. 2003; 31: 1995-2005.
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- NAR Methods Online
Analyzing partially randomized nucleic acid pools: straight dope on doping
- Rob Knight and Michael Yarus
Nucleic Acids Res. 2003; 31: e30.
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- Articles
Toucan: deciphering the cis-regulatory logic of coregulated genes
- Stein Aerts, Gert Thijs, Bert Coessens, Mik Staes, Yves Moreau, and Bart De Moor
Nucleic Acids Res. 2003; 31: 1753-1764.
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- Articles
ZCURVE: a new system for recognizing protein-coding genes in bacterial and archaeal genomes
- Feng-Biao Guo, Hong-Yu Ou, and Chun-Ting Zhang
Nucleic Acids Res. 2003; 31: 1780-1789.
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- Articles
The structure of full-length LysR-type transcriptional regulators. Modeling of the full-length OxyR transcription factor dimer
- Jolanta Zaim and Andrzej M. Kierzek
Nucleic Acids Res. 2003; 31: 1444-1454.
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- Articles
Improving the performance of DomainParser for structural domain partition using neural network
- Jun-tao Guo, Dong Xu, Dongsup Kim, and Ying Xu
Nucleic Acids Res. 2003; 31: 944-952.
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