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Computational methods
Computational Methods include useful new routines and algorithms with applications to Bioinformatics such as new sequence manipulation and analysis methods. Also included are new methods of computational analysis of biological data that facilitate data interpretation.
Citations 41-50 of 359 total displayed.
- Methods Online
Identification and classification of ncRNA molecules using graph properties
- Liam Childs, Zoran Nikoloski, Patrick May, and Dirk Walther
Nucleic Acids Res. 2009; 37: e66.
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- Methods Online
Human Splicing Finder: an online bioinformatics tool to predict splicing signals
- François-Olivier Desmet, Dalil Hamroun, Marine Lalande, Gwenaëlle Collod-Béroud, Mireille Claustres, and Christophe Béroud
Nucleic Acids Res. 2009; 37: e67.
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- Methods Online
Mining small RNA sequencing data: a new approach to identify small nucleolar RNAs in Arabidopsis
- Ho-Ming Chen and Shu-Hsing Wu
Nucleic Acids Res. 2009; 37: e69.
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- Computational Biology
PrimerHunter: a primer design tool for PCR-based virus subtype identification
- Jorge Duitama, Dipu Mohan Kumar, Edward Hemphill, Mazhar Khan, Ion I. Mandoiu, and Craig E. Nelson
Nucleic Acids Res. 2009; 37: 2483-2492.
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- Computational Biology
A feature-based approach to modeling protein–protein interaction hot spots
- Kyu-il Cho, Dongsup Kim, and Doheon Lee
Nucleic Acids Res. 2009; 37: 2672-2687.
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- Methods Online
Integrating sequence with FPC fingerprint maps
- William Nelson and Carol Soderlund
Nucleic Acids Res. 2009; 37: e36.
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- Methods Online
Model-based redesign of global transcription regulation
- Javier Carrera, Guillermo Rodrigo, and Alfonso Jaramillo
Nucleic Acids Res. 2009; 37: e38.
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- Methods Online
Identification of RNA molecules by specific enzyme digestion and mass spectrometry: software for and implementation of RNA mass mapping
- Rune Matthiesen and Finn Kirpekar
Nucleic Acids Res. 2009; 37: e48.
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- Computational Biology
UNIQUIMER 3D, a software system for structural DNA nanotechnology design, analysis and evaluation
- Jinhao Zhu, Bryan Wei, Yuan Yuan, and Yongli Mi
Nucleic Acids Res. 2009; 37: 2164-2175.
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- Computational Biology
A nonlinear dynamic model of DNA with a sequence-dependent stacking term
- Boian S. Alexandrov, Vladimir Gelev, Yevgeniya Monisova, Ludmil B. Alexandrov, Alan R. Bishop, Kim Ø. Rasmussen, and Anny Usheva
Nucleic Acids Res. 2009; 37: 2405-2410.
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