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Genomics


This category presents new strategies for the genomic scale analyses. Examples include, but are not limited to, positional or whole genome cloning (e.g. using HAC, BAC, YAC, or P1 systems, see also CLONING), mapping, large scale sequencing, synteny characterization and the global evaluation of genes and their expression patterns (see also MONITORING GENE EXPRESSION). Strategies involve traditional molecular biology methods as well as new technologies such as arrays.


Citations 131-140 of 258 total displayed.

Past content

Computational Biology
PLPD: reliable protein localization prediction from imbalanced and overlapped datasets
KiYoung Lee, Dae-Won Kim, DoKyun Na, Kwang H. Lee, and Doheon Lee
Nucleic Acids Res. 2006; 34: 4655-4666. [Abstract] [Full text] [Print PDF] [ Supplementary Data ]  

Methods Online
Capturing genomic signatures of DNA sequence variation using a standard anonymous microarray platform
C. H. Cannon, C. S. Kua, E. K. Lobenhofer, and P. Hurban
Nucleic Acids Res. 2006; 34: e121. [Abstract] [Full text] [Print PDF]  

Methods Online
Identifying functional gene sets from hierarchically clustered expression data: map of abiotic stress regulated genes in Arabidopsis thaliana
Matti Kankainen, Günter Brader, Petri Törönen, E. Tapio Palva, and Liisa Holm
Nucleic Acids Res. 2006; 34: e124. [Abstract] [Full text] [Print PDF] [ Supplementary Data ]  

Computational Biology
snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome
Jian-Hua Yang, Xiao-Chen Zhang, Zhan-Peng Huang, Hui Zhou, Mian-Bo Huang, Shu Zhang, Yue-Qin Chen, and Liang-Hu Qu
Nucleic Acids Res. 2006; 34: 5112-5123. [Abstract] [Full text] [Print PDF] [ Supplementary Data ]  

Computational Biology
Automated identification of multiple micro-organisms from resequencing DNA microarrays
Anthony P. Malanoski, Baochuan Lin, Zheng Wang, Joel M. Schnur, and David A. Stenger
Nucleic Acids Res. 2006; 34: 5300-5311. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

Methods Online
PLPD: reliable protein localization prediction from imbalanced and overlapped datasets
KiYoung Lee, Dae-Won Kim, DoKyun Na, Kwang H. Lee, and Doheon Lee
Nucleic Acids Res. Advance Access published on September 11, 2006; doi: 10.1093/nar/gkl638. [Abstract] [Full text] [Print PDF] [ Supplementary Data ]  

Methods Online
Identification of miRNA targets with stable isotope labeling by amino acids in cell culture
Jeppe Vinther, Mads M. Hedegaard, Paul P. Gardner, Jens S. Andersen, and Peter Arctander
Nucleic Acids Res. 2006; 34: e107. [Abstract] [Full text] [Print PDF] [ Supplementary Data ]  

Methods Online
Genotyping and annotation of Affymetrix SNP arrays
Philippe Lamy, Claus L. Andersen, Friedrik P. Wikman, and Carsten Wiuf
Nucleic Acids Res. 2006; 34: e100. [Abstract] [Full text] [Print PDF] [ Supplementary Data ]  

Methods Online
Genotyping and annotation of Affymetrix SNP arrays
Philippe Lamy, Claus L. Andersen, Friedrik P. Wikman, and Carsten Wiuf
Nucleic Acids Res. Advance Access published on August 9, 2006; doi: 10.1093/nar/gkl475. [Abstract] [Full text] [Print PDF] [ Supplementary Data ]  

Methods Online
High-throughput discovery of rare human nucleotide polymorphisms by Ecotilling
Bradley J. Till, Troy Zerr, Elisabeth Bowers, Elizabeth A. Greene, Luca Comai, and Steven Henikoff
Nucleic Acids Res. 2006; 34: e99. [Abstract] [Full text] [Print PDF] [ Supplementary data ]  

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