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Genomics


This category presents new strategies for the genomic scale analyses. Examples include, but are not limited to, positional or whole genome cloning (e.g. using HAC, BAC, YAC, or P1 systems, see also CLONING), mapping, large scale sequencing, synteny characterization and the global evaluation of genes and their expression patterns (see also MONITORING GENE EXPRESSION). Strategies involve traditional molecular biology methods as well as new technologies such as arrays.


Citations 191-200 of 258 total displayed.

Past content

NAR Methods Online
Genomic shotgun array: a procedure linking large-scale DNA sequencing with regional transcript mapping
Ling-Hui Li, Jian-Chiuan Li, Yung-Feng Lin, Chung-Yen Lin, Chung-Yung Chen, and Shih-Feng Tsai
Nucleic Acids Res. 2004; 32: e27. [Abstract] [Full text] [Print PDF]  

NAR Methods Online
PCR-based positive hybridization to detect genomic diversity associated with bacterial secondary metabolism
Francesco Pomati and Brett A. Neilan
Nucleic Acids Res. 2004; 32: e7. [Abstract] [Full text] [Print PDF]  

NAR Methods Online
Projector: automatic contig mapping for gap closure purposes
Sacha A. F. T. van Hijum, Aldert L. Zomer, Oscar P. Kuipers, and Jan Kok
Nucleic Acids Res. 2003; 31: e144. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

NAR Methods Online
Viral and microbial genotyping by a combination of multiplex competitive hybridization and specific extension followed by hybridization to generic tag arrays
Baback Gharizadeh, Max Käller, Pål Nyrén, Anders Andersson, Mathias Uhlén, Joakim Lundeberg, and Afshin Ahmadian
Nucleic Acids Res. 2003; 31: e146. [Abstract] [Full text] [Print PDF]  

NAR Methods Online
Enhanced crossover SCRATCHY: construction and high-throughput screening of a combinatorial library containing multiple non-homologous crossovers
Yasuaki Kawarasaki, Karl E. Griswold, James D. Stevenson, Tzvia Selzer, Stephen J. Benkovic, Brent L. Iverson, and George Georgiou
Nucleic Acids Res. 2003; 31: e126. [Abstract] [Full text] [Print PDF]  

NAR Methods Online
T-linker-specific ligation PCR (T-linker PCR): an advanced PCR technique for chromosome walking or for isolation of tagged DNA ends
Yan Yuanxin, An Chengcai, Li Li, Gu Jiayu, Tan Guihong, and Chen Zhangliang
Nucleic Acids Res. 2003; 31: e68. [Abstract] [Full text] [Print PDF]  

NAR Methods Online
Real-time PCR-based method for the estimation of genome sizes
Jochen Wilhelm, Alfred Pingoud, and Meinhard Hahn
Nucleic Acids Res. 2003; 31: e56. [Abstract] [Full text] [Print PDF]  

NAR Methods Online
RNaseCut: a MALDI mass spectrometry-based method for SNP discovery
Stefan Krebs, Ivica Medugorac, Doris Seichter, and Martin Förster
Nucleic Acids Res. 2003; 31: e37. [Abstract] [Full text] [Print PDF]  

NAR Methods Online
NotI passporting to identify species composition of complex microbial systems
Veronika Zabarovska, Alexey S. Kutsenko, Lev Petrenko, Gelena Kilosanidze, Olle Ljungqvist, Elisabeth Norin, Tore Midtvedt, Gösta Winberg, Roland Möllby, Vladimir I. Kashuba, Ingemar Ernberg, and Eugene R. Zabarovsky
Nucleic Acids Res. 2003; 31: e5. [Abstract] [Full text] [Print PDF]  

NAR Methods Online
Sequence tagged microsatellite profiling (STMP): improved isolation of DNA sequence flanking target SSRs
M. J. Hayden, G. Good, and P. J. Sharp
Nucleic Acids Res. 2002; 30: e129. [Abstract] [Full text] [Print PDF]  

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