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Genomics
This category presents new strategies for the genomic scale analyses. Examples include, but are not limited to, positional or whole genome cloning (e.g. using HAC, BAC, YAC, or P1 systems, see also CLONING), mapping, large scale sequencing, synteny characterization and the global evaluation of genes and their expression patterns (see also MONITORING GENE EXPRESSION). Strategies involve traditional molecular biology methods as well as new technologies such as arrays.
Citations 21-30 of 258 total displayed.
- Methods Online
Labeled microRNA pull-down assay system: an experimental approach for high-throughput identification of microRNA-target mRNAs
- Ren-Jun Hsu, Hsin-Jung Yang, and Huai-Jen Tsai
Nucleic Acids Res. 2009; 37: e77.
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- Methods Online
Mining small RNA sequencing data: a new approach to identify small nucleolar RNAs in Arabidopsis
- Ho-Ming Chen and Shu-Hsing Wu
Nucleic Acids Res. 2009; 37: e69.
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- Computational Biology
Engineering transcription factors with novel DNA-binding specificity using comparative genomics
- Tasha A. Desai, Dmitry A. Rodionov, Mikhail S. Gelfand, Eric J. Alm, and Christopher V. Rao
Nucleic Acids Res. 2009; 37: 2493-2503.
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- Methods Online
Integrating sequence with FPC fingerprint maps
- William Nelson and Carol Soderlund
Nucleic Acids Res. 2009; 37: e36.
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- Methods Online
Model-based redesign of global transcription regulation
- Javier Carrera, Guillermo Rodrigo, and Alfonso Jaramillo
Nucleic Acids Res. 2009; 37: e38.
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- Methods Online
An efficient platform for genetic selection and screening of gene switches in Escherichia coli
- Norihito Muranaka, Vandana Sharma, Yoko Nomura, and Yohei Yokobayashi
Nucleic Acids Res. 2009; 37: e39.
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- Methods Online
Experimental discovery of sRNAs in Vibrio cholerae by direct cloning, 5S/tRNA depletion and parallel sequencing
- Jane M. Liu, Jonathan Livny, Michael S. Lawrence, Marc D. Kimball, Matthew K. Waldor, and Andrew Camilli
Nucleic Acids Res. 2009; 37: e46.
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- Methods Online
Finding genes in Schistosoma japonicum: annotating novel genomes with help of extrinsic evidence
- Brona Brejová, Tomás Vinar, Yangyi Chen, Shengyue Wang, Guoping Zhao, Daniel G. Brown, Ming Li, and Yan Zhou
Nucleic Acids Res. 2009; 37: e52.
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- Methods Online
Efficient mouse transgenesis using Gateway-compatible ROSA26 locus targeting vectors and F1 hybrid ES cells
- Omar Nyabi, Michael Naessens, Katharina Haigh, Agnieszka Gembarska, Steven Goossens, Marion Maetens, Sarah De Clercq, Benjamin Drogat, Lieven Haenebalcke, Sonia Bartunkova, Ilse De Vos, Bram De Craene, Mansour Karimi, Geert Berx, Andras Nagy, Pierre Hilson, Jean-Christophe Marine, and Jody J. Haigh
Nucleic Acids Res. 2009; 37: e55.
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- Methods Online
A novel approach for organelle-specific DNA damage targeting reveals different susceptibility of mitochondrial DNA to the anticancer drugs camptothecin and topotecan
- M. C. Díaz de la Loza and R. E. Wellinger
Nucleic Acids Res. 2009; 37: e26.
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