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Genomics
This category presents new strategies for the genomic scale analyses. Examples include, but are not limited to, positional or whole genome cloning (e.g. using HAC, BAC, YAC, or P1 systems, see also CLONING), mapping, large scale sequencing, synteny characterization and the global evaluation of genes and their expression patterns (see also MONITORING GENE EXPRESSION). Strategies involve traditional molecular biology methods as well as new technologies such as arrays.
Citations 71-80 of 260 total displayed.
- Methods Online
Performance comparison between k-tuple distance and four model-based distances in phylogenetic tree reconstruction
- Kuan Yang and Liqing Zhang
Nucleic Acids Res. 2008; 36: e33.
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- Methods Online
Bisulfite sequencing Data Presentation and Compilation (BDPC) web server—a useful tool for DNA methylation analysis
- Christian Rohde, Yingying Zhang, Tomasz P. Jurkowski, Heinrich Stamerjohanns, Richard Reinhardt, and Albert Jeltsch
Nucleic Acids Res. 2008; 36: e34.
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- Methods Online
µChIP—a rapid micro chromatin immunoprecipitation assay for small cell samples and biopsies
- John Arne Dahl and Philippe Collas
Nucleic Acids Res. 2008; 36: e15.
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- Methods Online
From micrograms to picograms: quantitative PCR reduces the material demands of high-throughput sequencing
- Matthias Meyer, Adrian W. Briggs, Tomislav Maricic, Barbara Höber, Barbara Höffner, Johannes Krause, Antje Weihmann, Svante Pääbo, and Michael Hofreiter
Nucleic Acids Res. 2008; 36: e5.
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- Methods Online
Site-specific recombination in Schizosaccharomyces pombe and systematic assembly of a 400kb transgene array in mammalian cells using the integrase of Streptomyces phage  BT1
- Zhengyao Xu, Nicholas C. O. Lee, Felix Dafhnis-Calas, Sunir Malla, Margaret C. M. Smith, and William R. A. Brown
Nucleic Acids Res. 2008; 36: e9.
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- Methods Online
A ligation assay for multiplex analysis of CpG methylation using bisulfite-treated DNA
- Christina Dahl and Per Guldberg
Nucleic Acids Res. 2007; 35: e144.
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- Methods Online
Kinetic studies of Escherichia coli AlkB using a new fluorescence-based assay for DNA demethylation
- Todd W. Roy and A. S. Bhagwat
Nucleic Acids Res. 2007; 35: e147.
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- Methods Online
An engineered L-arginine sensor of Chlamydia pneumoniae enables arginine-adjustable transcription control in mammalian cells and mice
- Shizuka Hartenbach, Marie Daoud-El Baba, Wilfried Weber, and Martin Fussenegger
Nucleic Acids Res. 2007; 35: e136.
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- Methods Online
A comprehensive set of plasmids for vanillate- and xylose-inducible gene expression in Caulobacter crescentus
- Martin Thanbichler, Antonio A. Iniesta, and Lucy Shapiro
Nucleic Acids Res. 2007; 35: e137.
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- Methods Online
Antisense artifacts in transcriptome microarray experiments are resolved by actinomycin D
- Fabiana Perocchi, Zhenyu Xu, Sandra Clauder-Münster, and Lars M. Steinmetz
Nucleic Acids Res. 2007; 35: e128.
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