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Microarray


This category represents novel strategies for manufacturing and screening microarrays and for evaluating generated data. Of necessity, areas might overlap those of Genomics, Monitoring Gene Expression, Polymorphism/mutation detection, and/or Computational Methods.


Citations 71-80 of 161 total displayed.

Past content

Methods Online
Integrating probe-level expression changes across generations of Affymetrix arrays
Laura L. Elo, Leo Lahti, Heli Skottman, Minna Kyläniemi, Riitta Lahesmaa, and Tero Aittokallio
Nucleic Acids Res. 2005; 33: e193. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

Methods Online
Distortion of quantitative genomic and expression hybridization by Cot-1 DNA: mitigation of this effect
Heather L. Newkirk, Joan H.M. Knoll, and Peter K. Rogan
Nucleic Acids Res. 2005; 33: e191. [Abstract] [Full text] [Print PDF]  

Methods Online
Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data
Manhong Dai, Pinglang Wang, Andrew D. Boyd, Georgi Kostov, Brian Athey, Edward G. Jones, William E. Bunney, Richard M. Myers, Terry P. Speed, Huda Akil, Stanley J. Watson, and Fan Meng
Nucleic Acids Res. 2005; 33: e175. [Abstract] [Full text] [Print PDF]  

Methods Online
Protocols for the assurance of microarray data quality and process control
L. D. Burgoon, J. E. Eckel-Passow, C. Gennings, D. R. Boverhof, J. W. Burt, C. J. Fong, and T. R. Zacharewski
Nucleic Acids Res. 2005; 33: e172. [Abstract] [Full text] [Print PDF]  

Methods Online
Position of the fluorescent label is a crucial factor determining signal intensity in microarray hybridizations
Lei Zhang, Thomas Hurek, and Barbara Reinhold-Hurek
Nucleic Acids Res. 2005; 33: e166. [Abstract] [Full text] [Print PDF]  

Methods Online
Transformation of expression intensities across generations of Affymetrix microarrays using sequence matching and regression modeling
Soumyaroop Bhattacharya and Thomas J. Mariani
Nucleic Acids Res. 2005; 33: e157. [Abstract] [Full text] [Print PDF]  

Methods Online
Rapid detection of genomic imbalances using micro-arrays consisting of pooled BACs covering all human chromosome arms
Jeroen Knijnenburg, Marja van der Burg, Philomeen Nilsson, Hans Kristian Ploos van Amstel, Hans Tanke, and Károly Szuhai
Nucleic Acids Res. 2005; 33: e159. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

Methods Online
Genome-wide estimation of transcript concentrations from spotted cDNA microarray data
Arnoldo Frigessi, Mark A. van de Wiel, Marit Holden, Debbie H. Svendsrud, Ingrid K. Glad, and Heidi Lyng
Nucleic Acids Res. 2005; 33: e143. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

Methods Online
A post-processing method for optimizing synthesis strategy for oligonucleotide microarrays
Kang Ning, Kwok Pui Choi, Hon Wai Leong, and Louxin Zhang
Nucleic Acids Res. 2005; 33: e144. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

Methods Online
Improved statistical analysis of budding yeast TAG microarrays revealed by defined spike-in pools
Brian D. Peyser, Rafael A. Irizarry, Carol W. Tiffany, Ou Chen, Daniel S. Yuan, Jef D. Boeke, and Forrest A. Spencer
Nucleic Acids Res. 2005; 33: e140. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

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