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Monitoring gene expression
This category incorporates new techniques for detecting expression of specific genes or for following the simultaneous expression of many genes. Methods allowing the identification of new genes based on their expression patterns are also presented. Significant changes to standard methods (hybridization, cDNA libraries, subtracted hybridization) as well as new global strategies (RDA, DDRT-PCR, SAGE, arrays) are presented.
Citations 1-10 of 134 total displayed.
- Computational Biology
Internal standard-based analysis of microarray data. Part 1: analysis of differential gene expressions
- Igor Dozmorov and Ivan Lefkovits
Nucleic Acids Res. 2009; 37: 6323-6339.
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- Methods Online
Conserved principles of mammalian transcriptional regulation revealed by RNA half-life
- Caroline C. Friedel, Lars Dölken, Zsolt Ruzsics, Ulrich H. Koszinowski, and Ralf Zimmer
Nucleic Acids Res. 2009; 37: e115.
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- Methods Online
Imaging individual microRNAs in single mammalian cells in situ
- Jing Lu and Andrew Tsourkas
Nucleic Acids Res. 2009; 37: e100.
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- Methods Online
Labeled microRNA pull-down assay system: an experimental approach for high-throughput identification of microRNA-target mRNAs
- Ren-Jun Hsu, Hsin-Jung Yang, and Huai-Jen Tsai
Nucleic Acids Res. 2009; 37: e77.
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- Computational Biology
Allegro: Analyzing expression and sequence in concert to discover regulatory programs
- Yonit Halperin, Chaim Linhart, Igor Ulitsky, and Ron Shamir
Nucleic Acids Res. 2009; 37: 1566-1579.
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- Methods Online
Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms
- Peter A. C. 't Hoen, Yavuz Ariyurek, Helene H. Thygesen, Erno Vreugdenhil, Rolf H. A. M. Vossen, Renée X. de Menezes, Judith M. Boer, Gert-Jan B. van Ommen, and Johan T. den Dunnen
Nucleic Acids Res. 2008; 36: e141.
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- Methods Online
High-throughput stem-loop RT-qPCR miRNA expression profiling using minute amounts of input RNA
- Pieter Mestdagh, Tom Feys, Nathalie Bernard, Simone Guenther, Caifu Chen, Frank Speleman, and Jo Vandesompele
Nucleic Acids Res. 2008; 36: e143.
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- Gene Regulation, Chromatin and Epigenetics
Context dependent function of APPb enhancer identified using enhancer trap-containing BACs as transgenes in zebrafish
- Leighcraft A. Shakes, Tennison L. Malcolm, Kevin L. Allen, Supriyo De, Ken R. Harewood, and Pradeep K. Chatterjee
Nucleic Acids Res. 2008; 36: 6237-6248.
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- Methods Online
Highly sensitive and specific microRNA expression profiling using BeadArray technology
- Jing Chen, Jean Lozach, Eliza Wickham Garcia, Bret Barnes, Shujun Luo, Ivan Mikoulitch, Lixin Zhou, Gary Schroth, and Jian-Bing Fan
Nucleic Acids Res. 2008; 36: e87.
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- Methods Online
Light activation of transcription: photocaging of nucleotides for control over RNA polymerization
- André Vidal Pinheiro, Pedro Baptista, and João Carlos Lima
Nucleic Acids Res. 2008; 36: e90.
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