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Nucleic acid structure


This category presents methods to analyze nucleic acid structure either indirectly (e.g. by chemical probing, using electrophoresis) or directly (e.g. using fluorescence, NMR or crystallography). Specific methods to prepare nucleic acid samples for structural analyses are also described.


Citations 1-10 of 59 total displayed.

Most recent content

Methods Online
A high-resolution magnetic tweezer for single-molecule measurements
Kipom Kim and Omar A. Saleh
Nucleic Acids Res. 2009; 37: e136. [Abstract] [Full text] [Print PDF] [ Supplementary Data ]  

Past content

Methods Online
Analysis of splicing patterns by pyrosequencing
Agnès Méreau, Vincent Anquetil, Marie Cibois, Maud Noiret, Aline Primot, Audrey Vallée, and Luc Paillard
Nucleic Acids Res. 2009; 37: e126. [Abstract] [Full text] [Print PDF]  

Methods Online
Preparation of selective and segmentally labeled single-stranded DNA for NMR by self-primed PCR and asymmetrical endonuclease double digestion
Frank H. T. Nelissen, Frederic C. Girard, Marco Tessari, Hans A. Heus, and Sybren S. Wijmenga
Nucleic Acids Res. 2009; 37: e114. [Abstract] [Full text] [Print PDF] [ Supplementary Data ]  

Methods Online
Novel method for high-throughput colony PCR screening in nanoliter-reactors
Marcel Walser, Rene Pellaux, Andreas Meyer, Matthias Bechtold, Herve Vanderschuren, Richard Reinhardt, Joseph Magyar, Sven Panke, and Martin Held
Nucleic Acids Res. 2009; 37: e57. [Abstract] [Full text] [Print PDF] [ Supplementary Data ]  

Computational Biology
RNA structure prediction from evolutionary patterns of nucleotide composition
S. Smit, R. Knight, and J. Heringa
Nucleic Acids Res. 2009; 37: 1378-1386. [Abstract] [Full text] [Print PDF]  

Computational Biology
UNIQUIMER 3D, a software system for structural DNA nanotechnology design, analysis and evaluation
Jinhao Zhu, Bryan Wei, Yuan Yuan, and Yongli Mi
Nucleic Acids Res. 2009; 37: 2164-2175. [Abstract] [Full text] [Print PDF]  

Computational Biology
A nonlinear dynamic model of DNA with a sequence-dependent stacking term
Boian S. Alexandrov, Vladimir Gelev, Yevgeniya Monisova, Ludmil B. Alexandrov, Alan R. Bishop, Kim Ø. Rasmussen, and Anny Usheva
Nucleic Acids Res. 2009; 37: 2405-2410. [Abstract] [Full text] [Print PDF]  

Methods Online
Finding 3D motifs in ribosomal RNA structures
Alberto Apostolico, Giovanni Ciriello, Concettina Guerra, Christine E. Heitsch, Chiaolong Hsiao, and Loren Dean Williams
Nucleic Acids Res. 2009; 37: e29. [Abstract] [Full text] [Print PDF]  

Methods Online
Model-based probe set optimization for high-performance microarrays
Germán Gastón Leparc, Thomas Tüchler, Gerald Striedner, Karl Bayer, Peter Sykacek, Ivo L. Hofacker, and David P. Kreil
Nucleic Acids Res. 2009; 37: e18. [Abstract] [Full text] [Print PDF]  

Methods Online
A designed RNA selection: establishment of a stable complex between a target and selectant RNA via two coordinated interactions
Tomoaki Shiohara, Hirohide Saito, and Tan Inoue
Nucleic Acids Res. 2009; 37: e23. [Abstract] [Full text] [Print PDF] [ Supplementary Data ]  

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