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Nucleic acid structure
This category presents methods to analyze nucleic acid structure either indirectly (e.g. by chemical probing, using electrophoresis) or directly (e.g. using fluorescence, NMR or crystallography). Specific methods to prepare nucleic acid samples for structural analyses are also described.
Citations 1-10 of 44 total displayed.
- Methods Online
Measuring the dynamic surface accessibility of RNA with the small paramagnetic molecule TEMPOL
- Vincenzo Venditti, Neri Niccolai, and Samuel E. Butcher
Nucleic Acids Res. 2008; 36: e20.
[Abstract]
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- Methods Online
Cell-free cloning of highly expanded CTG repeats by amplification of dimerized expanded repeats
- Robert J. Osborne and Charles A. Thornton
Nucleic Acids Res. 2008; 36: e24.
[Abstract]
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- Methods Online
A new class of cleavable fluorescent nucleotides: synthesis and optimization as reversible terminators for DNA sequencing by synthesis
- Gerardo Turcatti, Anthony Romieu, Milan Fedurco, and Ana-Paula Tairi
Nucleic Acids Res. 2008; 36: e25.
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- Methods Online
Direct observation of the reversible unwinding of a single DNA molecule caused by the intercalation of ethidium bromide
- Masahito Hayashi and Yoshie Harada
Nucleic Acids Res. 2007; 35: e125.
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- Methods Online
An exonuclease I hydrolysis assay for evaluating G-quadruplex stabilization by small molecules
- Yuan Yao, Quan Wang, Yu-hua Hao, and Zheng Tan
Nucleic Acids Res. 2007; 35: e68.
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- RNA
Use of a novel Förster resonance energy transfer method to identify locations of site-bound metal ions in the U2U6 snRNA complex
- Faqing Yuan, Laura Griffin, LauraJane Phelps, Volker Buschmann, Kenneth Weston, and Nancy L. Greenbaum
Nucleic Acids Res. 2007; 35: 2833-2845.
[Abstract]
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- Methods Online
A facile method for attaching nitroxide spin labels at the 5' terminus of nucleic acids
- Gian Paola G. Grant and Peter Z. Qin
Nucleic Acids Res. 2007; 35: e77.
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- Methods Online
Specific residues at every third position of siRNA shape its efficient RNAi activity
- Takayuki Katoh and Tsutomu Suzuki
Nucleic Acids Res. 2007; 35: e27.
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- Methods Online
Paired termini stabilize antisense RNAs and enhance conditional gene silencing in Escherichia coli
- Nobutaka Nakashima, Tomohiro Tamura, and Liam Good
Nucleic Acids Res. 2006; 34: e138.
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- Methods Online
Using RNA secondary structures to guide sequence motif finding towards single-stranded regions
- Michael Hiller, Rainer Pudimat, Anke Busch, and Rolf Backofen
Nucleic Acids Res. 2006; 34: e117.
[Abstract]
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