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Nucleic acid structure
This category presents methods to analyze nucleic acid structure either indirectly (e.g. by chemical probing, using electrophoresis) or directly (e.g. using fluorescence, NMR or crystallography). Specific methods to prepare nucleic acid samples for structural analyses are also described.
Citations 11-20 of 59 total displayed.
- Methods Online
Sensing peptide–oligonucleotide interactions by a two-color fluorescence label: application to the HIV-1 nucleocapsid protein
- Volodymyr V. Shvadchak, Andrey S. Klymchenko, Hugues de Rocquigny, and Yves Mély
Nucleic Acids Res. 2009; 37: e25.
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- Structural Biology
Single-molecule detection of folding and unfolding of the G-quadruplex aptamer in a nanopore nanocavity
- Ji Wook Shim, Qiulin Tan, and Li-Qun Gu
Nucleic Acids Res. 2009; 37: 972-982.
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- Chemistry and Synthetic Biology
Assembling of G-strands into novel tetra-molecular parallel G4-DNA nanostructures using avidin–biotin recognition
- Natalia Borovok, Natalie Iram, Dragoslav Zikich, Jamal Ghabboun, Gideon I. Livshits, Danny Porath, and Alexander B. Kotlyar
Nucleic Acids Res. 2008; 36: 5050-5060.
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- Structural Biology
Crystal engineering of HIV-1 reverse transcriptase for structure-based drug design
- Joseph D. Bauman, Kalyan Das, William C. Ho, Mukta Baweja, Daniel M. Himmel, Arthur D. Clark, Jr, Deena A. Oren, Paul L. Boyer, Stephen H. Hughes, Aaron J. Shatkin, and Eddy Arnold
Nucleic Acids Res. 2008; 36: 5083-5092.
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- Methods Online
Chemical mapping of cytosines enzymatically flipped out of the DNA helix
- Dalia Daujotyte, Zita Liutkeviciute, Gintautas Tamulaitis, and Saulius Klimasauskas
Nucleic Acids Res. 2008; 36: e57.
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- Methods Online
Measuring the dynamic surface accessibility of RNA with the small paramagnetic molecule TEMPOL
- Vincenzo Venditti, Neri Niccolai, and Samuel E. Butcher
Nucleic Acids Res. 2008; 36: e20.
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- Methods Online
Cell-free cloning of highly expanded CTG repeats by amplification of dimerized expanded repeats
- Robert J. Osborne and Charles A. Thornton
Nucleic Acids Res. 2008; 36: e24.
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- Methods Online
A new class of cleavable fluorescent nucleotides: synthesis and optimization as reversible terminators for DNA sequencing by synthesis
- Gerardo Turcatti, Anthony Romieu, Milan Fedurco, and Ana-Paula Tairi
Nucleic Acids Res. 2008; 36: e25.
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[ Supplementary Data ]
- Methods Online
Direct observation of the reversible unwinding of a single DNA molecule caused by the intercalation of ethidium bromide
- Masahito Hayashi and Yoshie Harada
Nucleic Acids Res. 2007; 35: e125.
[Abstract]
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- Methods Online
An exonuclease I hydrolysis assay for evaluating G-quadruplex stabilization by small molecules
- Yuan Yao, Quan Wang, Yu-hua Hao, and Zheng Tan
Nucleic Acids Res. 2007; 35: e68.
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