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Nucleic acid structure


This category presents methods to analyze nucleic acid structure either indirectly (e.g. by chemical probing, using electrophoresis) or directly (e.g. using fluorescence, NMR or crystallography). Specific methods to prepare nucleic acid samples for structural analyses are also described.


Citations 21-30 of 59 total displayed.

Past content

RNA
Use of a novel Förster resonance energy transfer method to identify locations of site-bound metal ions in the U2–U6 snRNA complex
Faqing Yuan, Laura Griffin, LauraJane Phelps, Volker Buschmann, Kenneth Weston, and Nancy L. Greenbaum
Nucleic Acids Res. 2007; 35: 2833-2845. [Abstract] [Full text] [Print PDF]  

Methods Online
A facile method for attaching nitroxide spin labels at the 5' terminus of nucleic acids
Gian Paola G. Grant and Peter Z. Qin
Nucleic Acids Res. 2007; 35: e77. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

Methods Online
Specific residues at every third position of siRNA shape its efficient RNAi activity
Takayuki Katoh and Tsutomu Suzuki
Nucleic Acids Res. 2007; 35: e27. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

Methods Online
Paired termini stabilize antisense RNAs and enhance conditional gene silencing in Escherichia coli
Nobutaka Nakashima, Tomohiro Tamura, and Liam Good
Nucleic Acids Res. 2006; 34: e138. [Abstract] [Full text] [Print PDF] [ Supplementary Data ]  

Methods Online
Using RNA secondary structures to guide sequence motif finding towards single-stranded regions
Michael Hiller, Rainer Pudimat, Anke Busch, and Rolf Backofen
Nucleic Acids Res. 2006; 34: e117. [Abstract] [Full text] [Print PDF] [ Supplementary Data ]  

Methods Online
3D reconstruction and comparison of shapes of DNA minicircles observed by cryo-electron microscopy
Arnaud Amzallag, Cédric Vaillant, Mathews Jacob, Michael Unser, Jan Bednar, Jason D. Kahn, Jacques Dubochet, Andrzej Stasiak, and John H. Maddocks
Nucleic Acids Res. 2006; 34: e125. [Abstract] [Full text] [Print PDF]  

Methods Online
A matrix of 3,4-diaminobenzophenone for the analysis of oligonucleotides by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
Yu Fu, Songyun Xu, Chensong Pan, Mingliang Ye, Hanfa Zou, and Baochuan Guo
Nucleic Acids Res. 2006; 34: e94. [Abstract] [Full text] [Print PDF]  

Methods Online
Nucleic acid visualization with UCSF Chimera
Gregory S. Couch, Donna K. Hendrix, and Thomas E. Ferrin
Nucleic Acids Res. 2006; 34: e29. [Abstract] [Full text] [Print PDF] [ Supplementary Material ]  

Articles
Synthesis of novel poly(dG)–poly(dG)–poly(dC) triplex structure by Klenow exo fragment of DNA polymerase I
Alexander Kotlyar, Natalia Borovok, Tatiana Molotsky, Dmitry Klinov, Benjamin Dwir, and Eli Kapon
Nucleic Acids Res. 2005; 33: 6515-6521. [Abstract] [Full text] [Print PDF]  

Methods Online
Partial 13C isotopic enrichment of nucleoside monophosphates: useful reporters for NMR structural studies
Anita I. Kishore, Michael R. Mayer, and James H. Prestegard
Nucleic Acids Res. 2005; 33: e164. [Abstract] [Full text] [Print PDF]  

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