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Nucleic acid structure
This category presents methods to analyze nucleic acid structure either indirectly (e.g. by chemical probing, using electrophoresis) or directly (e.g. using fluorescence, NMR or crystallography). Specific methods to prepare nucleic acid samples for structural analyses are also described.
Citations 31-40 of 59 total displayed.
- Methods Online
Thermal difference spectra: a specific signature for nucleic acid structures
- Jean-Louis Mergny, Jing Li, Laurent Lacroix, Samir Amrane, and Jonathan B. Chaires
Nucleic Acids Res. 2005; 33: e138.
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- Articles
An evolutionary intra-molecular shift in the preferred U3 snoRNA binding site on pre-ribosomal RNA
- Anton V. Borovjagin and Susan A. Gerbi
Nucleic Acids Res. 2005; 33: 4995-5005.
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- Methods Online
Identification of antisense nucleic acid hybridization sites in mRNA molecules with self-quenching fluorescent reporter molecules
- Lida K. Gifford, Joanna B. Opalinska, David Jordan, Vikram Pattanayak, Paul Greenham, Anna Kalota, Michelle Robbins, Kathy Vernovsky, Lesbeth C. Rodriguez, Bao T. Do, Ponzy Lu, and Alan M. Gewirtz
Nucleic Acids Res. 2005; 33: e28.
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- Methods Online
Mapping the B-A conformational transition along plasmid DNA
- Karel Nejedlý, Jana Chládková, Michaela Vorlícková, Iva Hrabcová, and Jaroslav Kypr
Nucleic Acids Res. 2005; 33: e5.
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- Methods Online
Tris-borate is a poor counterion for RNA: a cautionary tale for RNA folding studies
- Karen L. Buchmueller and Kevin M. Weeks
Nucleic Acids Res. 2004; 32: e184.
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- Methods Online
Synthesis of unimolecularly circular G-quadruplexes as prospective molecular probes
- Tianyan Zhou, Guoshu Chen, Yifan Wang, Qiang Zhang, Ming Yang, and Tianhu Li
Nucleic Acids Res. 2004; 32: e173.
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- Articles
Method for direct discrimination of intra- and intermolecular hydrogen bonds, and characterization of the G(:A):G(:A):G(:A):G heptad, with scalar couplings across hydrogen bonds
- Hidetsugu Sotoya, Akimasa Matsugami, Tetsuro Ikeda, Kiyoshi Ouhashi, Seiichi Uesugi, and Masato Katahira
Nucleic Acids Res. 2004; 32: 5113-5118.
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- Methods Online
Effective and robust plasmid topology analysis and the subsequent characterization of the plasmid isoforms thereby observed
- Michael J. Molloy, Valerie S. Hall, Susannah I. Bailey, Katharine J. Griffin, Jim Faulkner, and Mark Uden
Nucleic Acids Res. 2004; 32: e129.
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- Methods Online
Semi-automated, single-band peak-fitting analysis of hydroxyl radical nucleic acid footprint autoradiograms for the quantitative analysis of transitions
- Keiji Takamoto, Mark R. Chance, and Michael Brenowitz
Nucleic Acids Res. 2004; 32: e119.
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- NAR Methods Online
A genomic selection strategy to identify accessible and dimerization blocking targets in the 5'-UTR of HIV-1 RNA
- Martin R. Jakobsen, Christian K. Damgaard, Ebbe S. Andersen, Anna Podhajska, and Jørgen Kjems
Nucleic Acids Res. 2004; 32: e67.
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