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Protein-protein interaction


This category describes methods using nucleic acids for the analysis of protein-protein interactions or methods specifically suited for the analysis of interactions between proteins involved in nucleic acid function. This includes, but is not limited to, two-hybrid system, surface display, arrays, generation of mutant libraries.


items 1-10 of 43 total displayed.

A comprehensive analysis of filamentous phage display vectors for cytoplasmic proteins: an analysis with different fluorescent proteins
Nileena Velappan, Hugh E. Fisher, Emanuele Pesavento, Leslie Chasteen, Sara D’Angelo, Csaba Kiss, Michelle Longmire, Peter Pavlik, and Andrew R. M. Bradbury
Nucleic Acids Res. 2010; 38: e22. [Abstract] [Full text] [Print PDF]  

A protein–protein interaction guided method for competitive transcription factor binding improves target predictions
Kirsti Laurila, Olli Yli-Harja, and Harri Lähdesmäki
Nucleic Acids Res. 2009; 37: e146. [Abstract] [Full text] [Print PDF] [ Supplementary Data ]  

Rapid antibody selection by mRNA display on a microfluidic chip
Noriko Tabata, Yuko Sakuma, Yumiko Honda, Nobuhide Doi, Hideaki Takashima, Etsuko Miyamoto-Sato, and Hiroshi Yanagawa
Nucleic Acids Res. 2009; 37: e64. [Abstract] [Full text] [Print PDF]  

Accurate characterization of weak macromolecular interactions by titration of NMR residual dipolar couplings: application to the CD2AP SH3-C:ubiquitin complex
Jose Luis Ortega-Roldan, Malene Ringkjøbing Jensen, Bernhard Brutscher, Ana I. Azuaga, Martin Blackledge, and Nico A. J. van Nuland
Nucleic Acids Res. 2009; 37: e70. [Abstract] [Full text] [Print PDF] [ Supplementary Data ]  

A feature-based approach to modeling protein–protein interaction hot spots
Kyu-il Cho, Dongsup Kim, and Doheon Lee
Nucleic Acids Res. 2009; 37: 2672-2687. [Abstract] [Full text] [Print PDF] [ Supplementary Data ]  

Mutually exclusive STAT1 modifications identified by Ubc9/substrate dimerization-dependent SUMOylation
Susan Zimnik, Matthias Gaestel, and Rainer Niedenthal
Nucleic Acids Res. 2009; 37: e30. [Abstract] [Full text] [Print PDF]  

Protein networks markedly improve prediction of subcellular localization in multiple eukaryotic species
KiYoung Lee, Han-Yu Chuang, Andreas Beyer, Min-Kyung Sung, Won-Ki Huh, Bonghee Lee, and Trey Ideker
Nucleic Acids Res. 2008; 36: e136. [Abstract] [Full text] [Print PDF] [ Supplementary Data ]  

Nonradioactive, ultrasensitive site-specific protein–protein photocrosslinking: interactions of {alpha}-helix 2 of TATA-binding protein with general transcription factor TFIIA and transcriptional repressor NC2
Younggyu Kim, Yon W. Ebright, Adam R. Goodman, Danny Reinberg, and Richard H. Ebright
Nucleic Acids Res. 2008; 36: 6143-6154. [Abstract] [Full text] [Print PDF] [ Supplementary Data ]  

The proofreading exonuclease subunit {varepsilon} of Escherichia coli DNA polymerase III is tethered to the polymerase subunit {alpha} via a flexible linker
Kiyoshi Ozawa, Slobodan Jergic, Ah Young Park, Nicholas E. Dixon, and Gottfried Otting
Nucleic Acids Res. 2008; 36: 5074-5082. [Abstract] [Full text] [Print PDF] [ Supplementary Data ]  

Global investigation of protein–protein interactions in yeast Saccharomyces cerevisiae using re-occurring short polypeptide sequences
S. Pitre, C. North, M. Alamgir, M. Jessulat, A. Chan, X. Luo, J. R. Green, M. Dumontier, F. Dehne, and A. Golshani
Nucleic Acids Res. 2008; 36: 4286-4294. [Abstract] [Full text] [Print PDF] [ Supplementary Data ]  

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