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RNA characterisation and manipulation
This category presents all methods to analyze RNA including, but not limited to, RNA production, enzymatic treatment of RNA, RNA sequencing and probing, strategies involving ribozymes, biophysical methods for the characterization of RNA.
Citations 11-20 of 143 total displayed.
- RNA
Constructing RNA dynamical ensembles by combining MD and motionally decoupled NMR RDCs: new insights into RNA dynamics and adaptive ligand recognition
- Aaron T. Frank, Andrew C. Stelzer, Hashim M. Al-Hashimi, and Ioan Andricioaei
Nucleic Acids Res. 2009; 37: 3670-3679.
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- Methods Online
Light-up properties of complexes between thiazole orange-small molecule conjugates and aptamers
- Renjun Pei, Jeffrey Rothman, Yuli Xie, and Milan N. Stojanovic
Nucleic Acids Res. 2009; 37: e59.
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- Methods Online
Identification of microRNAs with regulatory potential using a matched microRNA-mRNA time-course data
- Vivek Jayaswal, Mark Lutherborrow, David D. F. Ma, and Yee Hwa Yang
Nucleic Acids Res. 2009; 37: e60.
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- Methods Online
Mining small RNA sequencing data: a new approach to identify small nucleolar RNAs in Arabidopsis
- Ho-Ming Chen and Shu-Hsing Wu
Nucleic Acids Res. 2009; 37: e69.
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- RNA
Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications
- H. Alexander Ebhardt, Herbert H. Tsang, Denny C. Dai, Yifeng Liu, Babak Bostan, and Richard P. Fahlman
Nucleic Acids Res. 2009; 37: 2461-2470.
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- RNA
Selection, characterization and application of new RNA HIV gp 120 aptamers for facile delivery of Dicer substrate siRNAs into HIV infected cells
- Jiehua Zhou, Piotr Swiderski, Haitang Li, Jane Zhang, C. Preston Neff, Ramesh Akkina, and John J. Rossi
Nucleic Acids Res. 2009; 37: 3094-3109.
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- Methods Online
Experimental discovery of sRNAs in Vibrio cholerae by direct cloning, 5S/tRNA depletion and parallel sequencing
- Jane M. Liu, Jonathan Livny, Michael S. Lawrence, Marc D. Kimball, Matthew K. Waldor, and Andrew Camilli
Nucleic Acids Res. 2009; 37: e46.
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- Methods Online
Ariadne: a database search engine for identification and chemical analysis of RNA using tandem mass spectrometry data
- Hiroshi Nakayama, Misaki Akiyama, Masato Taoka, Yoshio Yamauchi, Yuko Nobe, Hideaki Ishikawa, Nobuhiro Takahashi, and Toshiaki Isobe
Nucleic Acids Res. 2009; 37: e47.
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- Methods Online
Identification of RNA molecules by specific enzyme digestion and mass spectrometry: software for and implementation of RNA mass mapping
- Rune Matthiesen and Finn Kirpekar
Nucleic Acids Res. 2009; 37: e48.
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- Methods Online
Detection of siRNA administered to cells and animals by using a fluorescence intensity distribution analysis polarization system
- Takashi Abe, Kazuhito Goda, Kazunobu Futami, and Yasuhiro Furuichi
Nucleic Acids Res. 2009; 37: e56.
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