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RNA characterisation and manipulation
This category presents all methods to analyze RNA including, but not limited to, RNA production, enzymatic treatment of RNA, RNA sequencing and probing, strategies involving ribozymes, biophysical methods for the characterization of RNA.
Citations 21-30 of 141 total displayed.
- Computational Biology
Genome-wide searching with base-pairing kernel functions for noncoding RNAs: computational and expression analysis of snoRNA families in Caenorhabditis elegans
- Kensuke Morita, Yutaka Saito, Kengo Sato, Kotaro Oka, Kohji Hotta, and Yasubumi Sakakibara
Nucleic Acids Res. 2009; 37: 999-1009.
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- RNA
A flow cytometry-based screen for synthetic riboswitches
- Sean A. Lynch and Justin P. Gallivan
Nucleic Acids Res. 2009; 37: 184-192.
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- Methods Online
Design of simple synthetic RNA thermometers for temperature-controlled gene expression in Escherichia coli
- Juliane Neupert, Daniel Karcher, and Ralph Bock
Nucleic Acids Res. 2008; 36: e124.
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- Gene regulation, Chromatin and Epigenetics
Analysis of regulatory network topology reveals functionally distinct classes of microRNAs
- Xueping Yu, Jimmy Lin, Donald J. Zack, Joshua T. Mendell, and Jiang Qian
Nucleic Acids Res. 2008; 36: 6494-6503.
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- Methods Online
Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers
- Zongzhi Liu, Todd Z. DeSantis, Gary L. Andersen, and Rob Knight
Nucleic Acids Res. 2008; 36: e120.
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- Methods Online
Chum-RNA allows preparation of a high-quality cDNA library from a single-cell quantity of mRNA without PCR amplification
- Takahiro Tougan, Daisuke Okuzaki, and Hiroshi Nojima
Nucleic Acids Res. 2008; 36: e92.
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- Methods Online
Specific ligation to double-stranded RNA for analysis of cellular RNA::RNA interactions
- Omid R. Faridani, Gerald M. McInerney, Katarina Gradin, and Liam Good
Nucleic Acids Res. 2008; 36: e99.
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- Methods Online
Light activation of transcription: photocaging of nucleotides for control over RNA polymerization
- André Vidal Pinheiro, Pedro Baptista, and João Carlos Lima
Nucleic Acids Res. 2008; 36: e90.
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- Methods Online
R-Coffee: a method for multiple alignment of non-coding RNA
- Andreas Wilm, Desmond G. Higgins, and Cédric Notredame
Nucleic Acids Res. 2008; 36: e52.
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- Methods Online
Performance comparison between k-tuple distance and four model-based distances in phylogenetic tree reconstruction
- Kuan Yang and Liqing Zhang
Nucleic Acids Res. 2008; 36: e33.
[Abstract]
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