Table 1 Increase in coverage of 6 representative proteomes over the past 9 years of Pfam
|
Release/Date |
No. Models |
E.coli K12 |
R.prowazekii |
M.jannaschii |
S.cerevisiae |
C.elegans |
H.sapiens |
|
| Protein coverage (%) |
18.0 (07/2005) |
7973 |
84 |
81 |
72 |
64 |
60 |
64 |
|
10.0 (07/2003) |
6190 |
76 |
77 |
68 |
60 |
57 |
60 |
|
5.5 (09/2000) |
2478 |
55 |
62 |
52 |
47 |
47 |
52 |
| Residue coverage (%) |
18.0 (07/2005) |
7973 |
65 |
61 |
55 |
36 |
35 |
37 |
|
10.0 (07/2003) |
6190 |
61 |
58 |
53 |
35 |
34 |
35 |
|
5.5 (09/2000) |
2478 |
42 |
44 |
40 |
25 |
26 |
29 |
|
The models from releases 5.5, 10.0 and 18.0 were searched against each proteome, downloaded from Integr8 (http://www.ebi.ac.uk/integr8) (16). Every protein domain satisfying the curated Pfam gathering threshold cut-off was scored as a hit. Two different coverage measures have been included, protein coverage and residue coverage.