Nucleic Acids Research, 1982, Vol. 10, No. 2 459-472
© 1982
SURVEYS AND SUMMARIES |
A catalogue of splice junction sequences
Department of Molecular Biophysics and Biochemistry, Yale University Sterling Hall of Medicine, 333 Cedar Street, New Haven, CT 06510, USA
Received November 3, 1981. Revised November 17, 1981. Accepted November 17, 1981.
Splice junction sequences from a large number of nuclear and viral genes encoding protein have been collected. The sequence ACAG/GTGAAGT was found to be a consensus of 139 exon-intron boundaries (or donor sequences) and (CT)nNTCAG/G was found to be a consensus of 130 intron-exon boundaries (or acceptor sequences). The possible role of splice junction sequences as signals for processing is discussed.
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 T. Willer, W. Amselgruber, R. Deutzmann, and S. Strahl Characterization of POMT2, a novel member of the PMT protein O-mannosyltransferase family specifically localized to the acrosome of mammalian spermatids Glycobiology, November 1, 2002; 12(11): 771 - 783. [Abstract] [Full Text] [PDF]
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 G S Charames, H Cheng, C A Gilpin, A G W Hunter, T Berk, and B Bapat A novel aberrant splice site mutation in the APC gene J. Med. Genet., October 1, 2002; 39(10): 754 - 757. [Full Text] [PDF]
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S. G. Khan, V. Muniz-Medina, T. Shahlavi, C. C. Baker, H. Inui, T. Ueda, S. Emmert, T. D. Schneider, and K. H. Kraemer The human XPC DNA repair gene: arrangement, splice site information content and influence of a single nucleotide polymorphism in a splice acceptor site on alternative splicing and function Nucleic Acids Res., August 15, 2002; 30(16): 3624 - 3631. [Abstract] [Full Text] [PDF]
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L L Barrow, H van Bokhoven, S Daack-Hirsch, T Andersen, S E C van Beersum, R Gorlin, and J C Murray Analysis of the p63 gene in classical EEC syndrome, related syndromes, and non-syndromic orofacial clefts J. Med. Genet., August 1, 2002; 39(8): 559 - 566. [Abstract] [Full Text] [PDF]
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H. Kochiwa, R. Suzuki, T. Washio, R. Saito, T. R. G. E. R. G. Phase II Team, H. Bono, P. Carninci, Y. Okazaki, R. Miki, Y. Hayashizaki, et al. Inferring Alternative Splicing Patterns in Mouse from a Full-Length cDNA Library and Microarray Data Genome Res., August 1, 2002; 12(8): 1286 - 1293. [Abstract] [Full Text] [PDF]
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J. H. N. Yik, A. Saxena, and P. H. Weigel The Minor Subunit Splice Variants, H2b and H2c, of the Human Asialoglycoprotein Receptor Are Present with the Major Subunit H1 in Different Hetero-oligomeric Receptor Complexes J. Biol. Chem., June 14, 2002; 277(25): 23076 - 23083. [Abstract] [Full Text] [PDF]
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H. Okamoto, M. Takahashi, T. Nishizawa, A. Tawara, K. Fukai, U. Muramatsu, Y. Naito, and A. Yoshikawa Genomic characterization of TT viruses (TTVs) in pigs, cats and dogs and their relatedness with species-specific TTVs in primates and tupaias J. Gen. Virol., June 1, 2002; 83(6): 1291 - 1297. [Abstract] [Full Text] [PDF]
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J. J. O. Turner, P. D. Leotlela, A. A. J. Pannett, S. A. Forbes, J. H. D. Bassett, B. Harding, P. T. Christie, D. Bowen-Jones, S. Ellard, A. Hattersley, et al. Frequent Occurrence of an Intron 4 Mutation in Multiple Endocrine Neoplasia Type 1 J. Clin. Endocrinol. Metab., June 1, 2002; 87(6): 2688 - 2693. [Abstract] [Full Text] [PDF]
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P. Liu, A. Gucwa, M. L. Stover, E. Buck, A. Lichtler, and D. Rowe Analysis of inhibitory action of modified U1 snRNAs on target gene expression: discrimination of two RNA targets differing by a 1 bp mismatch Nucleic Acids Res., June 1, 2002; 30(11): 2329 - 2339. [Abstract] [Full Text] [PDF]
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V. Armbruester, M. Sauter, E. Krautkraemer, E. Meese, A. Kleiman, B. Best, K. Roemer, and N. Mueller-Lantzsch A Novel Gene from the Human Endogenous Retrovirus K Expressed in Transformed Cells Clin. Cancer Res., June 1, 2002; 8(6): 1800 - 1807. [Abstract] [Full Text] [PDF]
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 I. Schrijver, M. A. Koerper, C. D. Jones, and J. L. Zehnder Homozygous factor V splice site mutation associated with severe factor V deficiency Blood, April 15, 2002; 99(8): 3063 - 3065. [Abstract] [Full Text] [PDF]
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 Y.-L. Yan, C. T. Miller, R. Nissen, A. Singer, D. Liu, A. Kirn, B. Draper, J. Willoughby, P. A. Morcos, A. Amsterdam, et al. A zebrafish sox9 gene required for cartilage morphogenesis Development, January 11, 2002; 129(21): 5065 - 5079. [Abstract] [Full Text] [PDF]
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 Y. Ma, S. Zhang, Q. Xia, G. Zhang, X. Huang, M. Huang, C. Xiao, A. Pan, Y. Sun, R. Lebo, et al. Molecular characterization of the TCP11 gene which is the human homologue of the mouse gene encoding the receptor of fertilization promoting peptide Mol. Hum. Reprod., January 1, 2002; 8(1): 24 - 31. [Abstract] [Full Text] [PDF]
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 S. Kaneko, C. B. Cooper, N. Nishioka, H. Yamasaki, A. Suzuki, S. E. Jarvis, A. Akaike, M. Satoh, and G. W. Zamponi Identification and Characterization of Novel Human Cav2.2 (alpha 1B) Calcium Channel Variants Lacking the Synaptic Protein Interaction Site J. Neurosci., January 1, 2002; 22(1): 82 - 92. [Abstract] [Full Text] [PDF]
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M. Harland, S. Mistry, D. T. Bishop, and J. A. Newton Bishop A deep intronic mutation in CDKN2A is associated with disease in a subset of melanoma pedigrees Hum. Mol. Genet., November 1, 2001; 10(23): 2679 - 2686. [Abstract] [Full Text] [PDF]
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M. Tsuneizumi, M. Emi, H. Nagai, H. Harada, G. Sakamoto, F. Kasumi, S. Inoue, T. Kazui, and Y. Nakamura Overrepresentation of the EBAG9 Gene at 8q23 Associated with Early-Stage Breast Cancers Clin. Cancer Res., November 1, 2001; 7(11): 3526 - 3532. [Abstract] [Full Text] [PDF]
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K. G. Patel, C. Liu, P. L. Cameron, and R. S. Cameron Myr 8, A Novel Unconventional Myosin Expressed during Brain Development Associates with the Protein Phosphatase Catalytic Subunits 1{alpha} and 1{gamma}1 J. Neurosci., October 15, 2001; 21(20): 7954 - 7968. [Abstract] [Full Text] [PDF]
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 A. O. Edwards, L. A. Donoso, and R. Ritter III A Novel Gene for Autosomal Dominant Stargardt-like Macular Dystrophy with Homology to the SUR4 Protein Family Invest. Ophthalmol. Vis. Sci., October 1, 2001; 42(11): 2652 - 2663. [Abstract] [Full Text] [PDF]
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H. Okamoto, T. Nishizawa, M. Takahashi, A. Tawara, Y. Peng, J. Kishimoto, and Y. Wang Genomic and evolutionary characterization of TT virus (TTV) in tupaias and comparison with species-specific TTVs in humans and non-human primates J. Gen. Virol., September 1, 2001; 82(9): 2041 - 2050. [Abstract] [Full Text] [PDF]
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L. Wang, D. Y. Oh, J. Bogerd, H. S. Choi, R. S. Ahn, J. Y. Seong, and H. B. Kwon Inhibitory Activity of Alternative Splice Variants of the Bullfrog GnRH Receptor-3 on Wild-Type Receptor Signaling Endocrinology, September 1, 2001; 142(9): 4015 - 4025. [Abstract] [Full Text] [PDF]
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 T. L. Johnson and J. Abelson Characterization of U4 and U6 interactions with the 5' splice site using a S. cerevisiae in vitro trans-splicing system Genes & Dev., August 1, 2001; 15(15): 1957 - 1970. [Abstract] [Full Text] [PDF]
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R. Goitsuka, H. Mamada, D. Kitamura, M. D. Cooper, and C.-l. H. Chen2 Genomic Structure and Transcriptional Regulation of the Early B Cell Gene chB1 J. Immunol., August 1, 2001; 167(3): 1454 - 1460. [Abstract] [Full Text] [PDF]
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M. Brudno, M. S. Gelfand, S. Spengler, M. Zorn, I. Dubchak, and J. G. Conboy Computational analysis of candidate intron regulatory elements for tissue-specific alternative pre-mRNA splicing Nucleic Acids Res., June 1, 2001; 29(11): 2338 - 2348. [Abstract] [Full Text] [PDF]
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G. Rena, F. Begg, A. Ross, C. MacKenzie, I. McPhee, L. Campbell, E. Huston, M. Sullivan, and M. D. Houslay Molecular Cloning, Genomic Positioning, Promoter Identification, and Characterization of the Novel Cyclic AMP-Specific Phosphodiesterase PDE4A10 Mol. Pharmacol., April 16, 2001; 59(5): 996 - 1011. [Abstract] [Full Text]
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