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Nucleic Acids Research, 1982, Vol. 10, No. 24 8351-8356
© 1982

MOLECULAR BIOLOGY

An algorithm for the display of nucleic acid secondary structure

G. Lapalme1, R.J. Cedergren2 and D. Sankoff3

1Départment d'Informatique et de Recherche opérationnelle Montréal, Queébec H3C3J7, Canada 2Département de Biochimie Montreéal, Queébec H3C3J7, Canada 3Centre de Recherches Matheématiques Appliqueées, Université de Montreéal Montreéal, Queébec H3C3J7, Canada

Received June 17, 1982. Accepted October 27, 1982.

A simple algorithm is presented for the graphic display of nucleic acid secondary structure. Examples of secondary structure displays are given for tRNA, 5s RNA and part of the 16s RNA. Due to its speed, this algorithm could easily be used in conjunction with secondary structure programs which calculate various alternate structures.


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