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Nucleic Acids Research, 1983, Vol. 11, No. 10 3019-3025
© 1983

MOLECULAR BIOLOGY

Complete nucleotide sequence of alfalfa mosaic virus RNA 2

Ben J.C. Cornelissen, Frans Th. Brederode, Gerrit H. Veenerman*, Jacques H. Van Boorn* and John F. Bol

Department of Biochemistry P.O.BOX 9505, 2300 RA Leiden, The Netherlands *Department of Organice Chemistry, State University of Leiden P.O.BOX 9505, 2300 RA Leiden, The Netherlands

Received March 29, 1983. Accepted April 22, 1983.

Double-stranded cDNA of in vitro polyadenylated alfalfa mosaic virus (AlMV) RNA 2 has been cloned and sequenced. The use of an oligodeoxyribo-nucleotide corresponding to the known sequence of the 5'-end of RNA 2 to prime second-strand DNA synthesis, enabled us to construct the complete primary structure of AlMV RNA 2. The sequence of 2,593 nucleotides contains a long open reading frame for a protein of Mr 89,753 starting at the first AUG codon from the 5'-end. This coding region is flanked by a 5'-terminal sequence of 54 nucleotides and a 3'-noncoding region of 166 nucleotides which includes the sequence of 145 nucleotides the three genomic RNAs of AlMV have in common


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