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Nucleic Acids Research, 1983, Vol. 11, No. 16 5691-5699
© 1983


CHEMISTRY

A nuclear magnetic resonance study of the ribotrinucleoside dlphophate UpUpC

Angela M. Gronenborn1, Barry J. Kimber1, G.Marius Clore1 and Larry W. McLaughlin2

1Division of Molecular Pharmacology, National Institute for Medical Research Mill Hill, London NW7 1AA, UK 2Max-Planck-Institut f{euro}r Experimentelle Medizin Abteilung Chernie, Hennann-Rein Strasse 3, D-3400 Gottingen, FRG

Received June 23, 1983. Accepted July 28, 1983.

500 MHz 1H, 67.89 MHz 13C and 80.97 MHZ 31P-NMR studies are reported on the ribotrinucleoside diphosphate UpUpC, the triplet codon corresponding to the amino acid phenylalanine. Complete spectral assignments are given and con-formational parameters for the backbone and the furanose rings are determined. All three nucleotide units show a near-balance for the N/S equilibrium with a slight preference for the N-type ribose ({sum}60%) . The backbone conformation around the C3'-03' bonds show a preference for the trans domain, while the orientation aroung the C5'-05' bonds is predominantly trans.


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