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Nucleic Acids Research, 1983, Vol. 11, No. 19 6913-6921
© 1983


CHEMISTRY

Long-range conformational trasition in yeast tRNAPhe, induced by the Y-base removal and detected by chloroacetaldehyde modification

W.J. Krzyzosiak+ and J. Ciesiolka

Institute of Bioorganic Chemistry, Polish Academy of Sciences 61-704 Poznan, Noskowskiego 12/14, Poland

+To whom all correspondence should be addressed

Received June 10, 1983. Revised August 19, 1983. Accepted August 19, 1983.

Chemical modification was used to study the conformational changes occuring in yeast tRNAPhe after the Y-base excision. The chemical probe was the adenine- and cytosine-specific reagent chloroacetaldehyde. Comparison of the modification patterns in tRNAPhe and tRNAPhe–Y shows that seven bases, adenines 35, 36 and 38 in the anticodon loop and adenines 73, 76 and cytoaines 74, 75 in the 3'-terminus were modified in both tRNAs with a quantitative difference in the modification level of the anticodon loop bases. The most interesting, however, is the qualitative difference consisting in modification of cytosine-60 in the TYC loop of tRNAPhe–Y. Some aspects of the mechanism of this long-distance conformational transition are briefly discussed.


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