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Nucleic Acids Research, 1983, Vol. 11, No. 5 1253-1265
© 1983

MOLECULAR BIOLOGY

Complete nucleotide sequence of alfalfa mosaic virus RNA 1

Ben J.C. Cornelissen, Frans Th. Brederode, Rob J.M. Moormann* and John F. Bol

Department of Biochemistry, State University of Leiden P.O. Box 9505, 2300 RA Leiden *Department of Molecular Biology, University of Nijmegen Toernooiveld, 6525 ED Nijmegen, The Netherlands

Received January 17, 1983. Accepted February 9, 1983.

Double-stranded cDNA of alfalfa mosaic virus (AIMV)RNA 1 has been cloned and sequenced. From clones with overlapping inserts, and other sequence data, the complete primary sequence of the 3644 nucleotides of RNA 1 was deduced: a long open reading frame for a protein of Mr 125,685 is flanked by a 5'-terminal sequence of 100 nucleotides and a 3' noncoding region of 163 nucleotides,including the sequence of 145 nucleotides the three genomic RNAs of AIMV have in common.The two UGA-termination codons halfway RNA 1, that were postulated by Van Tol et al.(FEBS Lett. 118, 67–71,1980) to account for partial translation of RNA 1 in vitro into Mr 58,000 and Mr 62,000 proteins, were not found in the reading frame of the Mr 125,685 protein.


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