Nucleic Acids Research, 1984, Vol. 12, No. 1Part1 387-395
© 1984
MINICOMPUTERS |
A comprehensive set of sequence analysis programs for the VAX
Laboratory of Genetics, University of Wisconsin Madison, WI 53706, USA
Received August 18, 1983.
The University of Wisconsin Genetics Computer Group (UWGCG) has been organized to develop computational tools for the analysis and publication of biological sequence data. A group of programs that will interact with each research-article has been developed for the Digital Equipment Corporation VAX computer using the VMS operating system. The programs available and the conditions for transfer are described.
*Current address: Silicon Graphics Inc., 630 Clyde Court, Mountain View, CA 94043, USA
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P. Zhu, R. A. Boykins, and C.-M. Tsai Genetic and functional analyses of the lgtH gene, a member of the {beta}-1,4-galactosyltransferase gene family in the genus Neisseria Microbiology, January 1, 2006; 152(1): 123 - 134. [Abstract] [Full Text] [PDF]
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 B. D. Tugwell, P. R. Patel, I. T. Williams, K. Hedberg, F. Chai, O. V. Nainan, A. R. Thomas, J. E. Woll, B. P. Bell, and P. R. Cieslak Transmission of Hepatitis C Virus to Several Organ and Tissue Recipients from an Antibody-Negative Donor Ann Intern Med, November 1, 2005; 143(9): 648 - 654. [Abstract] [Full Text] [PDF]
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 S. R. Leib, T. C. McGuire, and D. J. Prieur Comparison of the Tyrosine Aminotransferase cDNA and Genomic DNA Sequences of Normal Mink and Mink Affected with Tyrosinemia Type II J. Hered., July 1, 2005; 96(4): 302 - 309. [Abstract] [Full Text] [PDF]
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B. J. McMahon, D. L. Bruden, K. M. Petersen, L. R. Bulkow, A. J. Parkinson, O. Nainan, M. Khristova, C. Zanis, H. Peters, and H. S. Margolis Antibody Levels and Protection after Hepatitis B Vaccination: Results of a 15-Year Follow-up Ann Intern Med, March 1, 2005; 142(5): 333 - 341. [Abstract] [Full Text] [PDF]
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M. B. Joshi, M. E. Rogers, A. M. Shakarian, M. Yamage, S. A. Al-Harthi, P. A. Bates, and D. M. Dwyer Molecular Characterization, Expression, and in Vivo Analysis of LmexCht1: THE CHITINASE OF THE HUMAN PATHOGEN, LEISHMANIA MEXICANA J. Biol. Chem., February 4, 2005; 280(5): 3847 - 3861. [Abstract] [Full Text] [PDF]
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S. Yegneswaran, R. M. Mesters, J. A. Fernandez, and J. H. Griffin Prothrombin Residues 473-487 Contribute to Factor Va Binding in the Prothrombinase Complex J. Biol. Chem., November 19, 2004; 279(47): 49019 - 49025. [Abstract] [Full Text] [PDF]
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M. L. Dalebout, C. S. Baker, J. G. Mead, V. G. Cockcroft, and T. K. Yamada A Comprehensive and Validated Molecular Taxonomy of Beaked Whales, Family Ziphiidae J. Hered., November 1, 2004; 95(6): 459 - 473. [Abstract] [Full Text] [PDF]
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M.-C. Kao, S. Di Bernardo, M. Perego, E. Nakamaru-Ogiso, A. Matsuno-Yagi, and T. Yagi Functional Roles of Four Conserved Charged Residues in the Membrane Domain Subunit NuoA of the Proton-translocating NADH-Quinone Oxidoreductase from Escherichia coli J. Biol. Chem., July 30, 2004; 279(31): 32360 - 32366. [Abstract] [Full Text] [PDF]
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K. G. Helfenbein, H. M. Fourcade, R. G. Vanjani, and J. L. Boore The mitochondrial genome of Paraspadella gotoi is highly reduced and reveals that chaetognaths are a sister group to protostomes PNAS, July 20, 2004; 101(29): 10639 - 10643. [Abstract] [Full Text] [PDF]
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 C. G. Diniz, L. M. Farias, M. A. R. Carvalho, E. R. Rocha, and C. J. Smith Differential gene expression in a Bacteroides fragilis metronidazole-resistant mutant J. Antimicrob. Chemother., July 1, 2004; 54(1): 100 - 108. [Abstract] [Full Text] [PDF]
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V. Leh-Louis, B. Wirth, L. Despons, S. Wain-Hobson, S. Potier, and J. L. Souciet Differential evolution of the Saccharomyces cerevisiae DUP240 paralogs and implication of recombination in phylogeny Nucleic Acids Res., April 15, 2004; 32(7): 2069 - 2078. [Abstract] [Full Text] [PDF]
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B. Hamberger and K. Hahlbrock The 4-coumarate:CoA ligase gene family in Arabidopsis thaliana comprises one rare, sinapate-activating and three commonly occurring isoenzymes PNAS, February 17, 2004; 101(7): 2209 - 2214. [Abstract] [Full Text] [PDF]
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D. J. Orengo, M. Papaceit, and E. Juan A Minisatellite with Fold-Back Structure is Included in the 5'-Flanking Region of the Adh Gene of Scaptodrosophila lebanonensis J. Hered., January 1, 2004; 95(1): 62 - 69. [Abstract] [Full Text] [PDF]
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E. Baudouin, P. Frendo, M. Le Gleuher, and A. Puppo A Medicago sativa haem oxygenase gene is preferentially expressed in root nodules J. Exp. Bot., January 1, 2004; 55(394): 43 - 47. [Abstract] [Full Text] [PDF]
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 D. G Taylor, L. D Parilak, M. M LeWinter, and H. J Knot Quantification of the rat left ventricle force and Ca2+-frequency relationships: similarities to dog and human Cardiovasc Res, January 1, 2004; 61(1): 77 - 86. [Abstract] [Full Text] [PDF]
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C. I. Rodriguez, N. Girones, and M. Fresno Cha, a Basic Helix-Loop-Helix Transcription Factor Involved in the Regulation of Upstream Stimulatory Factor Activity J. Biol. Chem., October 31, 2003; 278(44): 43135 - 43145. [Abstract] [Full Text] [PDF]
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J. Cadinanos, I. Varela, D. A. Mandel, W. K. Schmidt, A. Diaz-Perales, C. Lopez-Otin, and J. M. P. Freije AtFACE-2, a functional Prenylated Protein Protease from Arabidopsis thaliana Related to Mammalian Ras-converting Enzymes J. Biol. Chem., October 24, 2003; 278(43): 42091 - 42097. [Abstract] [Full Text] [PDF]
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X. Liu, C. E. Bagwell, L. Wu, A. H. Devol, and J. Zhou Molecular Diversity of Sulfate-Reducing Bacteria from Two Different Continental Margin Habitats Appl. Envir. Microbiol., October 1, 2003; 69(10): 6073 - 6081. [Abstract] [Full Text] [PDF]
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V. Emmerlich, N. Linka, T. Reinhold, M. A. Hurth, M. Traub, E. Martinoia, and H. E. Neuhaus The plant homolog to the human sodium/dicarboxylic cotransporter is the vacuolar malate carrier PNAS, September 16, 2003; 100(19): 11122 - 11126. [Abstract] [Full Text] [PDF]
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 S. Szuplewski, B. Kottler, and R. Terracol The Drosophila bZIP transcription factor Vrille is involved in hair and cell growth Development, August 15, 2003; 130(16): 3651 - 3662. [Abstract] [Full Text] [PDF]
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E.-M. Yubero-Serrano, E. Moyano, N. Medina-Escobar, J. Munoz-Blanco, and J.-L. Caballero Identification of a strawberry gene encoding a non-specific lipid transfer protein that responds to ABA, wounding and cold stress J. Exp. Bot., August 1, 2003; 54(389): 1865 - 1877. [Abstract] [Full Text] [PDF]
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K. Schneider, K. Hovel, K. Witzel, B. Hamberger, D. Schomburg, E. Kombrink, and H.-P. Stuible The substrate specificity-determining amino acid code of 4-coumarate:CoA ligase PNAS, July 8, 2003; 100(14): 8601 - 8606. [Abstract] [Full Text] [PDF]
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M. Zuker Mfold web server for nucleic acid folding and hybridization prediction Nucleic Acids Res., July 1, 2003; 31(13): 3406 - 3415. [Abstract] [Full Text] [PDF]
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A. A. Sartori and J. Jiricny Enzymology of Base Excision Repair in the Hyperthermophilic Archaeon Pyrobaculum aerophilum J. Biol. Chem., June 27, 2003; 278(27): 24563 - 24576. [Abstract] [Full Text] [PDF]
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H. Wolff, R. Brack-Werner, M. Neumann, T. Werner, and R. Schneider Integrated functional and bioinformatics approach for the identification and experimental verification of RNA signals: application to HIV-1 INS Nucleic Acids Res., June 1, 2003; 31(11): 2839 - 2851. [Abstract] [Full Text] [PDF]
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O. Nufer, S. Mitrovic, and H.-P. Hauri Profile-based Data Base Scanning for Animal L-type Lectins and Characterization of VIPL, a Novel VIP36-like Endoplasmic Reticulum Protein J. Biol. Chem., April 25, 2003; 278(18): 15886 - 15896. [Abstract] [Full Text] [PDF]
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R. Venema, H. Tjalsma, J. M. van Dijl, A. de Jong, K. Leenhouts, G. Buist, and G. Venema Active Lipoprotein Precursors in the Gram-positive Eubacterium Lactococcus lactis J. Biol. Chem., April 18, 2003; 278(17): 14739 - 14746. [Abstract] [Full Text] [PDF]
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