Nucleic Acids Research, 1984, Vol. 12, No. 2 857-872
© 1984
SURVEYS AND SUMMARIES |
Compilation and analysis of sequences upstream from the translational start site in eukaryotic mRNAs
Department of Biological Sciences, University of Pittsburgh Pittsburgh, PA 15260, USA
Received November 15, 1983. Accepted November 21, 1983.
5'-Noncoding sequences have been tabulated for 211 messenger R'JAs from higher eukaryotic cells. The 5'-proximal AUG triplet serves as the initiator codon in 95% of the mRNAs examined. The most conspicuous conserved feature is the presence of a purine (most often A) three nucleotides upstream from the AUG initiator codon; only 6 of the mRNAs in the survey have a pyrimidine in that position. There is a predominance of C in positions –1, –2, –4 and –5, just upstream from the initiator codon. The sequence 
(G) thus emerges as a consensus sequence for eukaryotic initiation sites. The extent to which the ribosome binding site in a given mRNA matches the –1 to –5 consensus sequence varies: more than half of the mRNAs in the tabulation have 3 or 4 nucleotides in common with the CCACC consensus, but only ten mRNAs conform perfectly.
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 K. Kusche and T. Burmester Diplopod Hemocyanin Sequence and the Phylogenetic Position of the Myriapoda Mol. Biol. Evol., August 1, 2001; 18(8): 1566 - 1573. [Abstract] [Full Text] [PDF]
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J. Bogerd, M. Blomenröhr, E. Andersson, H.H.A.G.M. van der Putten, C.P. Tensen, H.F. Vischer, J.C.M. Granneman, C. Janssen-Dommerholt, H.J.Th. Goos, and R.W. Schulz Discrepancy Between Molecular Structure and Ligand Selectivity of a Testicular Follicle-Stimulating Hormone Receptor of the African Catfish (Clarias gariepinus) Biol Reprod, June 1, 2001; 64(6): 1633 - 1643. [Abstract] [Full Text]
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 L. Tsavaler, M. H. Shapero, S. Morkowski, and R. Laus Trp-p8, a Novel Prostate-specific Gene, Is Up-Regulated in Prostate Cancer and Other Malignancies and Shares High Homology with Transient Receptor Potential Calcium Channel Proteins Cancer Res., May 1, 2001; 61(9): 3760 - 3769. [Abstract] [Full Text]
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 A. Courseaux and J.-L. Nahon Birth of Two Chimeric Genes in the Hominidae Lineage Science, February 16, 2001; 291(5507): 1293 - 1297. [Abstract] [Full Text]
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S. P. Fling, R. A. Sutherland, L. N. Steele, B. Hess, S. E. F. D'Orazio, J.-F. Maisonneuve, M. F. Lampe, P. Probst, and M. N. Starnbach CD8+ T cells recognize an inclusion membrane-associated protein from the vacuolar pathogen Chlamydia trachomatis PNAS, January 30, 2001; 98(3): 1160 - 1165. [Abstract] [Full Text] [PDF]
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S. Santagata, C. A. Gomez, C. Sobacchi, F. Bozzi, M. Abinun, S. Pasic, P. Cortes, P. Vezzoni, and A. Villa N-terminal RAG1 frameshift mutations in Omenn's syndrome: Internal methionine usage leads to partial V(D)J recombination activity and reveals a fundamental role in vivo for the N-terminal domains PNAS, December 19, 2000; 97(26): 14572 - 14577. [Abstract] [Full Text] [PDF]
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 A. Balestrazzi, A. Chini, G. Bernacchia, A. Bracci, G. Luccarini, R. Cella, and D. Carbonera Carrot cells contain two top1 genes having the coding capacity for two distinct DNA topoisomerases I J. Exp. Bot., December 1, 2000; 51(353): 1979 - 1990. [Abstract] [Full Text] [PDF]
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 P. Prapunpoj, K. Yamauchi, N. Nishiyama, S. J. Richardson, and G. Schreiber Evolution of structure, ontogeny of gene expression, and function of Xenopus laevis transthyretin Am J Physiol Regulatory Integrative Comp Physiol, December 1, 2000; 279(6): R2026 - R2041. [Abstract] [Full Text] [PDF]
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 S. Y. Sharp, L. R. Kelland, M. R. Valenti, L. A. Brunton, S. Hobbs, and P. Workman Establishment of an Isogenic Human Colon Tumor Model for NQO1 Gene Expression: Application to Investigate the Role of DT-Diaphorase in Bioreductive Drug Activation In Vitro and In Vivo Mol. Pharmacol., November 1, 2000; 58(5): 1146 - 1155. [Abstract] [Full Text]
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 K. Saito, Y. Tomigahara, N. Ohe, N. Isobe, I. Nakatsuka, and H. Kaneko Lack of Significant Estrogenic or Antiestrogenic Activity of Pyrethroid Insecticides in Three in Vitro Assays Based on Classic Estrogen Receptor {alpha}-Mediated Mechanisms Toxicol. Sci., September 1, 2000; 57(1): 54 - 60. [Abstract] [Full Text] [PDF]
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 W. C. Smith, E. V. Gurevich, D. R. Dugger, S. A. Vishnivetskiy, C. L. Shelamer, J. H. McDowell, and V. V. Gurevich Cloning and Functional Characterization of Salamander Rod and Cone Arrestins Invest. Ophthalmol. Vis. Sci., August 1, 2000; 41(9): 2445 - 2455. [Abstract] [Full Text]
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R. J. Knox, T. C. Jenkins, S. M. Hobbs, S. Chen, R. G. Melton, and P. J. Burke Bioactivation of 5-(Aziridin-1-yl)-2,4-dinitrobenzamide (CB 1954) by Human NAD(P)H Quinone Oxidoreductase 2: A Novel Co-substrate-mediated Antitumor Prodrug Therapy Cancer Res., August 1, 2000; 60(15): 4179 - 4186. [Abstract] [Full Text]
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V. A. Westbrook, A. B. Diekman, K. L. Klotz, V. V. Khole, C. v. Kap-Herr, W. L. Golden, R. L. Eddy, T. B. Shows, M. H. Stoler, C.-Y. G. Lee, et al. Spermatid-Specific Expression of the Novel X-Linked Gene Product SPAN-X Localized to the Nucleus of Human Spermatozoa Biol Reprod, August 1, 2000; 63(2): 469 - 481. [Abstract] [Full Text]
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D. W. Lee, K. Zhang, Z.-Q. Ning, E. H. Raabe, S. Tintner, R. Wieland, B. J. Wilkins, J. M. Kim, R. I. Blough, and R. J. Arceci Proliferation-associated SNF2-like Gene (PASG): A SNF2 Family Member Altered in Leukemia1 Cancer Res., July 1, 2000; 60(13): 3612 - 3622. [Abstract] [Full Text]
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J. H. Ellis, C. Ashman, M. N. Burden, K. E. Kilpatrick, M. A. Morse, and P. A. Hamblin GRID: A Novel Grb-2-Related Adapter Protein That Interacts with the Activated T Cell Costimulatory Receptor CD28 J. Immunol., June 1, 2000; 164(11): 5805 - 5814. [Abstract] [Full Text] [PDF]
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J. K. Millar, J. C. Wilson-Annan, S. Anderson, S. Christie, M. S. Taylor, C. A. M. Semple, R. S. Devon, D. M. S. Clair, W. J. Muir, D. H. R. Blackwood, et al. Disruption of two novel genes by a translocation co-segregating with schizophrenia Hum. Mol. Genet., May 22, 2000; 9(9): 1415 - 1423. [Abstract] [Full Text] [PDF]
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A. Bulfone, E. Menguzzato, V. Broccoli, A. Marchitiello, C. Gattuso, M. Mariani, G. G. Consalez, S. Martinez, A. Ballabio, and S. Banfi Barhl1, a gene belonging to a new subfamily of mammalian homeobox genes, is expressed in migrating neurons of the CNS Hum. Mol. Genet., May 22, 2000; 9(9): 1443 - 1452. [Abstract] [Full Text] [PDF]
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S. Sei, Q.-e. Yang, D. O'Neill, K. Yoshimura, K. Nagashima, and H. Mitsuya Identification of a Key Target Sequence To Block Human Immunodeficiency Virus Type 1 Replication within the gag-pol Transframe Domain J. Virol., May 15, 2000; 74(10): 4621 - 4633. [Abstract] [Full Text]
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G.-J. J. Chang, A. R. Hunt, and B. Davis A Single Intramuscular Injection of Recombinant Plasmid DNA Induces Protective Immunity and Prevents Japanese Encephalitis in Mice J. Virol., May 1, 2000; 74(9): 4244 - 4252. [Abstract] [Full Text]
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M. Peterfy, T. Gyuris, and L. Takacs Signal-exon trap: a novel method for the identification of signal sequences from genomic DNA Nucleic Acids Res., April 1, 2000; 28(7): e26 - e26. [Abstract] [Full Text] [PDF]
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C.-C. Hu, T.C. Hart, B.R. Dupont, J.J. Chen, X. Sun, Q. Qian, C.H. Zhang, H. Jiang, V.L. Mattern, J.T. Wright, et al. Cloning Human Enamelin cDNA, Chromosomal Localization, and Analysis of Expression during Tooth Development Journal of Dental Research, April 1, 2000; 79(4): 912 - 919. [Abstract] [PDF]
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E. Yakirevich and Y. Naot Cloning of a Glucose Phosphate Isomerase/Neuroleukin-Like Sperm Antigen Involved in Sperm Agglutination Biol Reprod, April 1, 2000; 62(4): 1016 - 1023. [Abstract] [Full Text]
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M. D. Baron and T. Barrett Rinderpest Viruses Lacking the C and V Proteins Show Specific Defects in Growth and Transcription of Viral RNAs J. Virol., March 15, 2000; 74(6): 2603 - 2611. [Abstract] [Full Text]
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Y. Wang and J. S. Morrow Identification and Characterization of Human SLP-2, a Novel Homologue of Stomatin (Band 7.2b) Present in Erythrocytes and Other Tissues J. Biol. Chem., March 10, 2000; 275(11): 8062 - 8071. [Abstract] [Full Text] [PDF]
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 T. Takahashi, R. Honda, and Y. Nishikawa Cloning of the human cDNA which can complement the defect of the yeast mannosyltransferase I-deficient mutant alg 1 Glycobiology, March 1, 2000; 10(3): 321 - 327. [Abstract] [Full Text] [PDF]
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 D. Hasenstab, H. Lea, and A. W. Clowes Local Plasminogen Activator Inhibitor Type 1 Overexpression in Rat Carotid Artery Enhances Thrombosis and Endothelial Regeneration While Inhibiting Intimal Thickening Arterioscler Thromb Vasc Biol, March 1, 2000; 20(3): 853 - 859. [Abstract] [Full Text] [PDF]
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